Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., cation/multidrug efflux pump AcrB from Caulobacter crescentus NA1000

 Score =  261 bits (667), Expect = 2e-73
 Identities = 257/1045 (24%), Positives = 452/1045 (43%), Gaps = 53/1045 (5%)

Query: 6    MSEQKQTPPENNENQGVAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAM 65
            MSEQ  T   +     V+A+ I N +   +V +  +I G  A+  L   + P        
Sbjct: 1    MSEQNNTAEHSTGQLRVSAWAIRNPIPVAVVFIALMIAGVGAYLGLPIKQFPNVEFPAVT 60

Query: 66   VVTSYPGATPQQVEEEVTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQ 125
            V  +  GA P ++E +VT P+E A+  ++ V  + S   +G S  T T++ N G +DL +
Sbjct: 61   VTVTQSGAAPGEMETQVTRPIEDAVASISNVKTIRSSVVQGAS--TTTIEFNLG-EDLQK 117

Query: 126  IWDELRRKVNDLKGALPPGVNPPLVID-DFGDVYGILLAVTGEGYSYKELLDYVD-YLRR 183
            + DE+R KV+  +  LP  V+ PLV   +      I  AV+  G S  +L  ++D  + R
Sbjct: 118  VTDEVRSKVDQARAVLPREVDEPLVQRLEITSAPIITYAVSAPGMSATDLSWFIDDTVTR 177

Query: 184  ELELIDGVSKVSVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGS 243
             L+   GV++V+  G    ++ + I   R+++ G++   +   L++ ++ +  G   IG 
Sbjct: 178  ALQGEKGVAQVARVGGVDREINVIIDPDRMASFGVTAPQLNQALASFSVDAPGGRASIGG 237

Query: 244  EYIRIHPTGEFDDVEKLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALN 303
                +   G    +E+L  + +   G +  + L DVA+V +G  E        +GK  + 
Sbjct: 238  REQTLRVLGAATTIEQLRQITIPVAGGR-YVKLTDVAQVGQGSEE-ERGFARLDGKPVVA 295

Query: 304  VGVSFAQGVNVVEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAV 363
              V   +  + V V  R    + +L  + P G+   +++S   E   S      +L + +
Sbjct: 296  FQVMKTRDSSDVAVEDRVKAAVDKLAEKTP-GVTFVKIFSTVDETRASFKATEHTLLEGM 354

Query: 364  AIV-IIVLLFFMGLRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDN 422
             +  ++V LF    R+ L+  L + ++++ TF FM +    L  ++L AL + +G+LVD+
Sbjct: 355  LLASLVVFLFLREWRATLITALAMPVSLVPTFAFMAFMGFSLNVVTLLALTLVIGILVDD 414

Query: 423  AIVVVEGILIGTQKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGT 482
            A+V +E I     +G+   QAA +        ++  T   V  F P+       G++   
Sbjct: 415  AVVEIENIEKRVARGQRPFQAAMEGADAIGLAVVATTFTIVAVFVPVSFMPGMPGQFFKE 474

Query: 483  LFTVLLISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMR 542
                + ++++ S   A  LTP  A  F +  KAP       P++GF    YR  L++ + 
Sbjct: 475  FGLTVAVAVLFSLVVARLLTPLLAAYFLKPAKAP---HPRKPFEGF----YRNILDWSLD 527

Query: 543  RAWLTMGVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEK 602
               L   +  L    S+     +  AF P +    + + V  P G  +   D  + ++  
Sbjct: 528  HRILACIIGGLIFVGSIMLAGLLPTAFQPPANNNYYYLKVQGPPGATVADMDRTVQQVTT 587

Query: 603  WLSAQESVDSVTTTAGKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHL- 661
             +  +  V +V    G  +       S      A   I  R      +  +    RA L 
Sbjct: 588  LMRKRPEVTNVFAQVGSNIGSGWGGQSSADIRDATITIVLRGDRELSVTEIKQEVRASLR 647

Query: 662  DARYPQINYKLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDW 721
            D    ++N +      G  G ++++  +V  D  +L   AA++   M       + R   
Sbjct: 648  DIPDARVNLQ------GDWGSSEVQTILVSEDGPLLERTAAKIEREMQGLSTVADPRPSS 701

Query: 722  RERTKVLEPQFNESQARRYGITKADVDEFLAMSFSG---KTIGVYRDGTTLMPIVARLPE 778
                  +  +    +A R G++ AD+     ++  G     +     G   +PI  RLP 
Sbjct: 702  PPSGPEILIRPKADEAARLGVSSADIAAIARVATVGDIDANVAKMTQGERRIPIRVRLPA 761

Query: 779  EERVDIRNIEGMKIWSPALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPD--- 835
            E R D+  +  +++  P  +              +     I R  RKR +TV AD +   
Sbjct: 762  ESRQDLEALGALRV--PTANGGSTRLDTVAELSFQAGPAKIDRFGRKRQMTVEADLNNGA 819

Query: 836  LLGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESSGDAKA--SLFKTMPLGYL---- 889
             LGE  A           +   LP    L  G    S+GD +A   LF    +  L    
Sbjct: 820  QLGEAMA-----------DVDNLPTMKNLPAGVAPASAGDQEAFVELFTGFAVALLSAVG 868

Query: 890  FMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNG 949
             +F + V LF S  + + +   +PLA+ G   GLL +       +L+GFL L G+  KN 
Sbjct: 869  LVFGVLVLLFRSFFKPITILSALPLAIGGAFFGLLVMGQSLSMPSLIGFLMLMGLAAKNS 928

Query: 950  IVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDI-----FFRPM 1004
            I+L++    +  +G     A++DA   R RP+ M  +  + GM+P    I     F +PM
Sbjct: 929  ILLVEYAIEQERAGMSQREAILDACHERARPIVMTTLAMMAGMLPTALGIGTGAEFRQPM 988

Query: 1005 AVTIMFGLGFATVLTLIVVPVLYRL 1029
            AV ++ GL  +TVL+L++VPV+Y +
Sbjct: 989  AVAVIGGLITSTVLSLVLVPVVYEI 1013



 Score = 47.0 bits (110), Expect = 7e-09
 Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 5/153 (3%)

Query: 883  TMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLS 942
            T+  G L   L+        + +LI  L +P++++     +  +      + LL    + 
Sbjct: 349  TLLEGMLLASLVVFLFLREWRATLITALAMPVSLVPTFAFMAFMGFSLNVVTLLALTLVI 408

Query: 943  GMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPL-----LP 997
            G+L+ + +V ++ IE  +  G+ P+ A ++ + +    V     T +   +P+     +P
Sbjct: 409  GILVDDAVVEIENIEKRVARGQRPFQAAMEGADAIGLAVVATTFTIVAVFVPVSFMPGMP 468

Query: 998  DIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLF 1030
              FF+   +T+   + F+ V+  ++ P+L   F
Sbjct: 469  GQFFKEFGLTVAVAVLFSLVVARLLTPLLAAYF 501