Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., cation/multidrug efflux pump acrB5 from Caulobacter crescentus NA1000

 Score =  325 bits (833), Expect = 1e-92
 Identities = 262/1016 (25%), Positives = 471/1016 (46%), Gaps = 35/1016 (3%)

Query: 34   WMVSLI----FLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKA 89
            W  +L+     ++ G  AF ++ R EDP F I   +V    PGA P ++E+ V  P+E A
Sbjct: 13   WQFTLVAFGLLVMLGFNAFTSIPRSEDPHFPIPIVIVRAVLPGAEPSEMEQLVVDPIEDA 72

Query: 90   IQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGV-NPP 148
            +  L  +++V S+S  G + ++V    +  P+   + +D++ R+VN ++G LP G+    
Sbjct: 73   VDGLDNIEKVESVSLDGAAVVSVHFTWDVDPE---RKYDQVVREVNAIRGNLPTGLARLD 129

Query: 149  LVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFIEI 208
            +      +V  + +A+T +    + L    D LR  L+ + GV +    G     V + +
Sbjct: 130  IQRARTTEVSVVQVALTSDTLPMRRLEKVADRLRERLDRVPGVREAQYWGAPPSDVQVTL 189

Query: 209  SMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILSER 268
             + R+S L +    V + L      +  GA++ G     +   G F D++ +GD  +   
Sbjct: 190  DLARLSALKLPATAVTDALRAAGAEAPIGAVQAGERRFNVKSGGAFRDLKTIGDTPVRSI 249

Query: 269  GAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRLAEL 328
            G + ++ + DVA +     E P++V  FNGK A+ + V    G +V ++ Q   + L E 
Sbjct: 250  GGK-VVRVSDVATIGWAQQE-PTHVTRFNGKRAVFITVKQKDGQDVAKITQEVRKVLDEY 307

Query: 329  KYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLILLL 388
            +   P G+ +   + Q + V   +       G A+ +V+I LL  +G R+G+++ + + L
Sbjct: 308  ERALPAGVKLERAFFQAENVKHRLKNLFRDFGIALVLVLITLLP-LGPRAGVVVMVSIPL 366

Query: 389  TVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATDIV 448
            ++L     +Q F   L ++S+   V++LG+LVD++IV+ E I    ++G  R +AA +  
Sbjct: 367  SLLIGLSMLQAFGFTLNQLSIAGFVLSLGLLVDDSIVITENIARRIREGEERTEAAVNGA 426

Query: 449  TQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFADL 508
             Q    ++G T   + AF P+      +G Y  +L   +L ++  S   ++++ PF A  
Sbjct: 427  RQIGLAVVGCTATLMLAFLPLMALPAGSGAYIKSLPVTVLCTVGASLLVSLTIIPFLASR 486

Query: 509  FFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFTKV-KQ 567
                   P          G I   YR  L   + R WL +  L+L L A+     KV   
Sbjct: 487  ILDKHSDPEGNALLRAVNGGIQRFYRPVLHASLARPWLAL-ALMLALCATTVPLVKVIGS 545

Query: 568  AFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQRFMLT 627
            + FP + TP F++ +  P+G  +  TD  L  ++  L+ +  +    +  G+G  +    
Sbjct: 546  SLFPPAETPQFLIRIETPDGASLARTDQALRFVDARLAKEPEILWRASNLGRGNPQIFYN 605

Query: 628  YSPEKSYAAYGEITTRVTDYQQ------LAALMARFRAHLDARYPQINYKLKQIELGPGG 681
             +  +S  ++ E+      ++       L AL A F     A+YP     +   E GP  
Sbjct: 606  KTQRESSNSFAEVYASFEAWKPGKSDKVLDALRADF-----AKYPGARITVVAFENGPPI 660

Query: 682  GAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYG 741
             A I  RI G +  VL+++AA+    +   PGA ++ +  R     L+   +E++A   G
Sbjct: 661  DAPIAIRITGQNLEVLKALAARTEAALKDTPGARDVSNPMRLDRTDLDLGVDEAKAAALG 720

Query: 742  ITKADVDEFLAMSFSGKTIGVYRD-GTTLMPIVARLPEEE-----RVDIRNIEGMKIWSP 795
            +          ++ SG+    +RD       +  RLP  +     R  +  + G+ +   
Sbjct: 721  VPAGAARRVTRLALSGEEAARFRDPDGDDYAVRVRLPTAQVDGAARNPLSALNGVYV-PT 779

Query: 796  ALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEA 855
            A  E  PL  +     +R     I R +R+R +TV +     G  TA   Q  +Q   + 
Sbjct: 780  AEGEAAPLGAIATP-TLRSSPARIDRFDRERTVTVTSYV-ATGYLTAKVTQDVVQRLEKE 837

Query: 856  IPLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLA 915
            +P+PPGY L  GG+ E+  ++ A L   + +    +  + V  F   K +L+V   +P  
Sbjct: 838  VPMPPGYRLSLGGQAEAQSESFAGLGAAVLVAIFGILAVLVLEFQKFKTALVVAGIIPFG 897

Query: 916  VIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASL 975
            + G    L        F A +G ++L G+ +KN I+L+D  E     G + + A+  A  
Sbjct: 898  IFGAVLALALTGNSLSFTATIGLIALIGIEIKNSILLVDFTEQLRREGMNLHDAIEKAGE 957

Query: 976  SRVRPVCMAAVTTILGMIPLLPDI--FFRPMAVTIMFGLGFATVLTLIVVPVLYRL 1029
             R  PV + +VT I G++PL  +    + P+A+ I+ GL  +T+L+ +  PV+Y L
Sbjct: 958  VRFLPVLLTSVTAIGGLLPLALERSGLYSPLAIAIIGGLITSTLLSRVATPVMYWL 1013