Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1032 a.a., cation/multidrug efflux pump acrB4 from Caulobacter crescentus NA1000

 Score =  562 bits (1448), Expect = e-164
 Identities = 317/1019 (31%), Positives = 555/1019 (54%), Gaps = 10/1019 (0%)

Query: 19   NQGVAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQV 78
            N  ++A  +  R I+  + +     G  AF  LGR EDP+F+IK   +VT++PGAT Q++
Sbjct: 2    NFNLSALAVRERSITLFLIIAMTFAGAFAFMKLGRAEDPSFSIKILTIVTAWPGATAQEM 61

Query: 79   EEEVTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLK 138
            +++V  PLEK +Q+L + D   + +  GL+  T+T+K+     +L + + + R+K+ D  
Sbjct: 62   QDQVAEPLEKRMQELKWYDRSETFTRPGLAFTTLTLKDQIPAKELQEQFYQTRKKMADEA 121

Query: 139  GALPPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSG 198
              LP GV  P V D++GDV   L A+  +G   + L+   + LR+ L  + GV KV + G
Sbjct: 122  PNLPRGVLGPFVNDEYGDVSFALYALKAKGEPQRLLVRQAETLRQRLLHVPGVKKVQIVG 181

Query: 199  QQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVE 258
            +Q +++F+E S  R++TLG+SP+ +F  L+ +NL++ AGAI      +++   G  D +E
Sbjct: 182  EQPQKIFVEFSQARLATLGVSPRDLFAALNDRNLITPAGAIETQGPQVQVRLDGAIDSLE 241

Query: 259  KLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVG 318
            K+ +  +   G    + L D+AEVKRGY +  + +I   G+ A+ + V      N +E+G
Sbjct: 242  KIKETPIVVGGR--TLKLGDIAEVKRGYEDPATFLIRNGGEPAIVLSVVMKDRFNGLELG 299

Query: 319  QRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRS 378
            +  ++    +  + P+G+  +++  Q   + ++   F++    A+A+VI+V L  +G R 
Sbjct: 300  KNLEKEAKAISAEMPLGMSFSKITDQAVNIAEAYGEFMLKFFVALAVVIVVSLISLGFRV 359

Query: 379  GLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGR 438
            G+++ + + LT+ G F+ M     D  RI+LGAL+++LG+LVD+AI+++E I++  ++G+
Sbjct: 360  GVVVAMAVPLTLAGVFVIMLVTGRDFDRITLGALILSLGLLVDDAIIIIETIVVKMEEGK 419

Query: 439  TRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTA 498
             R+ AAT     T  P+L  T++ +    P+G ++ + GEY G +F V+  +L+ SWF A
Sbjct: 420  DRISAATYAWGHTAAPMLAGTLVTIIGLMPVGFAQSSAGEYAGNIFWVVAFALITSWFVA 479

Query: 499  ISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAAS 558
            +  TP+   L     K P  G  +  Y    +   R  + + +   +     + + +  +
Sbjct: 480  VIFTPYLGVLMIPKIK-PIEGGHAAIYDTPRYRQLRSLVTWTVDNRFKVAAGVGVAMVLA 538

Query: 559  LYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAG 618
            +     +KQ FFP S  P  +++V MPEG  I +T   + ++E WL+ Q   +  T+  G
Sbjct: 539  VLMMGGIKQQFFPLSDRPEVLIEVQMPEGQSIGSTSEAVAKVEAWLAKQPEAEIYTSYIG 598

Query: 619  KGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAH-LDARYPQINYKLKQIEL 677
            +G  RF L  SPE    ++ +I     + +   AL  RFR    D        +  QI  
Sbjct: 599  QGAPRFFLAISPELPDPSFAKIVVLTPNEKARDALKNRFRQFAADGSVQGAKLRATQIVF 658

Query: 678  GPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQA 737
            GP     +  R++G +   +R IA +V  VM A+ G   +  DW ER   +    ++ + 
Sbjct: 659  GPPSPFPVAFRVMGPNADRVREIAERVKGVMLANQGMRQVNTDWGERAPTVHFVLDQDRL 718

Query: 738  RRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPAL 797
            R +G++  D  + L    +G  +   R+    + ++AR   ++R+D   +    +   A 
Sbjct: 719  RAFGLSSTDAAQQLQFLLTGVPVTQVREDIRTVDVLARTSGQDRLDPARLGAFTLVG-AA 777

Query: 798  SEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPD--LLGEETAATLQQRLQPQIEA 855
             + IPL Q+    E+R EDP++ R++R   +TV  D D  L   + +  +Q+ LQP I+ 
Sbjct: 778  GQRIPLDQIGKA-EIRMEDPILRRRDRMTTITVRGDIDERLQPPDVSTKVQKELQPIIKT 836

Query: 856  IPLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLA 915
              LP GY +E GG  E +G A  +L    PL ++ M ++ +F   S+    +V LT PLA
Sbjct: 837  --LPAGYRIEMGGSIEEAGKANKALAVVFPLMFILMMVVIIFQVRSLSAMWMVLLTAPLA 894

Query: 916  VIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASL 975
            ++GV   LL  + PFGF A+LG ++L+G++++N ++L+ QI+I    G DP+ AVV+A++
Sbjct: 895  LVGVAPTLLIFHQPFGFNAILGLIALAGIIMRNSLILIGQIQINQEEGLDPFHAVVEATV 954

Query: 976  SRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVK 1034
             R RPV + A+  +   IPL   +F+  MA T++ G    T+LTL+ +P LY ++  +K
Sbjct: 955  QRARPVILTALAAVFAFIPLTLSVFWSSMAYTLIGGTIGGTILTLVFLPALYAMWFKIK 1013