Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1042 a.a., Multidrug efflux pump subunit AcrB from Paraburkholderia bryophila 376MFSha3.1

 Score =  573 bits (1477), Expect = e-167
 Identities = 337/1009 (33%), Positives = 551/1009 (54%), Gaps = 20/1009 (1%)

Query: 38   LIFLIG-----GTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKAIQQ 92
            ++FLI      G  A+  L + EDP FT +  ++ T +PGAT +QV+E+VT  + + +Q+
Sbjct: 23   VVFLIALATAFGILAYTRLAQSEDPPFTFRVMVIRTFWPGATARQVQEQVTDRIGRKLQE 82

Query: 93   LTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPLVID 152
               +D V S S  G S +  TMK++    D+P+ W ++R+KV D+   LP G+  P   D
Sbjct: 83   TPAIDFVRSYSRPGESLMFFTMKDSAPVKDVPETWYQVRKKVGDIAATLPQGIQGPFFND 142

Query: 153  DFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFIEISMKR 212
            +FGDVY  +  + G+G+S  +L DY D LR  L  + GV+KV   G   + ++IEI+  +
Sbjct: 143  EFGDVYTNIYTLEGDGFSPAQLHDYADQLRTVLLRVPGVAKVDYFGDPDQHIYIEITNTQ 202

Query: 213  ISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILSERGAQG 272
            ++ LGISPQ +   +++QN VS AG +    + + + P+G+F DV  L D ++   G   
Sbjct: 203  LTRLGISPQQLGQAINSQNAVSQAGTLTTTDDRVFVRPSGQFKDVTALADTLIRINGRS- 261

Query: 273  LIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRLAELKYQQ 332
               L D+A +KRGY +     +   G+  L +GV+   G +V+ +G+  D  +  L+   
Sbjct: 262  -FRLGDIATIKRGYDDPVVTQMRAGGQAVLGIGVTMQPGGDVIRLGKALDAEMVRLRKAL 320

Query: 333  PIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLILLLTVLG 392
            P+G+ + EV S P  V  SV  F+ ++ +AVAIV++V L  +G+R+G+++ + + + +  
Sbjct: 321  PVGLQLTEVSSMPHAVAHSVDDFLEAVAEAVAIVLVVSLVSLGVRTGMVVVISIPVVLAV 380

Query: 393  TFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATDIVTQTK 452
            T + M  F I L ++SLG LV+ALG+LVD+AI+ VE + +  ++G +R +AA    T T 
Sbjct: 381  TALCMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWSRTRAAAFAYTSTA 440

Query: 453  WPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFADLFFRG 512
            +P+L  T++ V+ F PI L++ +TGEY  ++F V  I+L+ SW  A+ L P         
Sbjct: 441  FPMLTGTLVTVSGFLPIALAKSSTGEYTRSIFEVSAIALIASWLAAVVLIPLLGYHLLPE 500

Query: 513  QKA---PASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFTKVKQAF 569
            +K     A   E D Y    +   R ++ +C+ R ++ + + V+    ++ GFT V Q F
Sbjct: 501  RKRAAHEADDHEHDIYDTRFYSRLRGWIGWCIERRFVVLAITVVLFVLAMAGFTLVPQQF 560

Query: 570  FPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQRFMLTYS 629
            FPSS  P  +VDV +PEG    AT      LEK L  +  +D      G G  RF L   
Sbjct: 561  FPSSDRPELLVDVRLPEGASFNATLREAQRLEKVLVGRPEIDHTVDFVGTGAPRFYLPLD 620

Query: 630  PEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGAKIEARI 689
             + +   + +        +    L       L   +P I  +L ++E GP  G  ++ R+
Sbjct: 621  QQLTQPNFAQFVITAKSVKDREKLAQWLEPELRNNFPAIRTRLSRLENGPPVGYPVQFRV 680

Query: 690  VGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRE-RTKVLEPQFNESQARRYGITKADVD 748
             G D   +RSIA +V   + +D G  N++ DW E   + +  + ++ +AR  G++  D+ 
Sbjct: 681  SGDDIATVRSIAERVAATLRSDHGTRNVQFDWDEPAERSVRFEVDQKKARELGVSSDDIS 740

Query: 749  EFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQVTL 808
             FLAM+ SG T+  YR+   L+ +  R P+ ERVD   +  + +  P  +  +PL   TL
Sbjct: 741  SFLAMTLSGYTVTQYRERDKLISVDLRAPKAERVDPAKL--LTLAMPTPNGAVPLG--TL 796

Query: 809  GY-EMRWEDPLIVRKNRKRMLTVMAD--PDLLGEETAATLQQRLQPQIEAIPLPPGYFLE 865
            G+     E  +I  ++R+  +TV +D  P   G +    + + L P I A  LP GY ++
Sbjct: 797  GHLRNDLEYGVIWERDRQPTITVQSDVAPGAQGIDVTHAVDKALGP-IRA-NLPVGYRIQ 854

Query: 866  WGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLA 925
             GG  E SG  + S+   MP+  + +  + +    S    L+V LT PL +IGV   LL 
Sbjct: 855  IGGSVEESGKGQTSINAQMPIMIIAVLTLLMIQLQSFARVLMVVLTAPLGLIGVVFTLLL 914

Query: 926  LNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAA 985
               PFGF+A+LG +++ G++++N ++L+DQIE ++ SG   + A+V A++ R RP+ + A
Sbjct: 915  FGQPFGFVAMLGVIAMFGIIMRNSVILVDQIEQDIASGHKRFDAIVGATVRRFRPITLTA 974

Query: 986  VTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVK 1034
               +L +IPLL   FF PMA  +M G+  ATVLTL  +P LY +   V+
Sbjct: 975  AAAVLALIPLLRSNFFGPMATALMGGITSATVLTLFYLPALYAMSFRVR 1023