Pairwise Alignments

Query, 448 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis JJ

 Score =  181 bits (460), Expect = 4e-50
 Identities = 128/460 (27%), Positives = 227/460 (49%), Gaps = 47/460 (10%)

Query: 9   SRGQFTSRFGFIMAAAGSAVGLGNVWGFPTQAASNGGAVFLLVYLCMVFLLAYPMLVAEL 68
           +R Q+ S+ GFI+AA GSAVGLGN+W FP  A  NGG  FL+ Y   +  +   ++V EL
Sbjct: 2   AREQWASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLEL 61

Query: 69  TIGRYGQSNPIRAFRSVWPQGKWGAILLGVIGMVVVSLILSFYAIVAGWLV--------- 119
            +G   + +   A R +    +W    +G + +    +I ++Y  +  W +         
Sbjct: 62  ALGHSTKGSAPLALRRLGKNFEW----IGWLAIATAFIITTYYTAIIAWALVYLVKLFMV 117

Query: 120 ------GSLFGSGLTLIGADSASQWLTSFSTERNLILMVSFMVL---TMFVVRNGVANGI 170
                 G  F S +  + +      L  F    NL ++V   ++      VV +GV  G+
Sbjct: 118 GFPTDFGGFFFSDILALSSGHGD--LGGF----NLPILVGLALIWGVNYIVVNSGVRKGL 171

Query: 171 EKWSTRLMPLLFVLFGLLTVYIFTQEGALDGLKMYLVPDLS-HFTPDVVVSAMGQAFFSL 229
           EK +  LMP+LF L   L V   T  G L G++ YL P+ +   TP V + A  Q FF+L
Sbjct: 172 EKANEILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTL 231

Query: 230 SLGVCVMTTYGSYLNKEANLPKTAAQVALIDTGVAFIAGLMVLPAM-FVAKHNGVEIFSS 288
           SLG  +M  Y SYL K+++L  +A  ++L++ G +F+AG  V   + ++A   GV I   
Sbjct: 232 SLGFGIMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPI--- 288

Query: 289 SGELLNSDTLVFTVLPAMFDTMGAVGAVIGIIFFLLMIIAALTSSISMLEVPVACAVEEL 348
           S  +  S  L F   P     M   G ++  IFF+ + +A ++SS+S++E   +  +++ 
Sbjct: 289 SEVVTQSIGLAFVAFPQALSLMPG-GIILAAIFFIALFVAGISSSVSLVESTASAVIDKF 347

Query: 349 ---QQKRSSAVLWIGGLVTIISGVIVLNFSSLFGL--VINFTTVYSQPIIALLITLIAGW 403
              + K +SAV+      +  + +I    + L+ L  V ++   ++ P++A+L  +++ W
Sbjct: 348 NLPRHKAASAVI----ATSFFASLIYATNAGLYWLDSVDHYINWFTIPLVAVLEIIVSIW 403

Query: 404 IWNRNQILSELKQGCPDIENSLFWKIWPWYVRLVCPVLML 443
           I+      S+L++   ++        W ++  +  P+ ++
Sbjct: 404 IFKG----SKLEKYIDNLSEYNLGSFWKFFAGIFSPLFLI 439