Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score = 67.8 bits (164), Expect = 3e-16
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDG-DTMLLQEVATQTGDGQ-LYLVHRLDKMTSGILLLA 61
           ILF     +++NK   ++VH   G D  +++ + +     + L LVHRLD+ TSG+LL+A
Sbjct: 108 ILFEDKQIIVLNKPAGIAVHGGSGVDYGVIESLRSLRPTCKFLELVHRLDRDTSGVLLIA 167

Query: 62  RNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWK---LVNSQEN 118
           +   A   L      ++++K Y A+   + ++   ++   + +    S +    VNS+  
Sbjct: 168 KKRMALRHLHDQLRNKQMQKVYQALVRGQWQEHDRVVKAPLLKITLKSGERIVRVNSEGK 227

Query: 119 PAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADESD------ 172
           P+ T+F          L    P TG+THQIRV  +  G  I  D  Y+     D      
Sbjct: 228 PSETRFRVLRRFDEASLVEASPVTGRTHQIRVHCQYQGHPIACDDKYSEQKFDDAMRAKG 287

Query: 173 --RGYLHAFALRFTY 185
             R +LHA  L FT+
Sbjct: 288 LQRLFLHAAQLTFTH 302