Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Rahnella sp. WP5

 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 13/195 (6%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGDTM-LLQEVATQTGDGQ-LYLVHRLDKMTSGILLLA 61
           IL+     L++NK    +VH   G +  +++ +     D + L LVHRLD+ TSG+LL+A
Sbjct: 95  ILYEDDHLLILNKPSGTAVHGGSGLSFGVIEGLRALRPDARFLELVHRLDRDTSGVLLVA 154

Query: 62  RNATAASELSQGFAKRKVEKFYLA-IGSKKPKKKQGLICGDMERSRRSSWKL--VNSQEN 118
           +  +A   L +    + ++K YLA +  + P   + +    ++   +S  ++  VN++  
Sbjct: 155 KKRSALRSLHEQLRVKSMQKDYLALVRGEWPSHCKVVQAPLLKNILQSGERIVRVNAEGK 214

Query: 119 PAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADES------- 171
           P+ T+F          L    P TG+THQIRV     G  I  D  Y   D         
Sbjct: 215 PSETRFKIEERYEFATLVKASPVTGRTHQIRVHALHAGHPIAFDDRYGERDFDAKLSGTG 274

Query: 172 -DRGYLHAFALRFTY 185
            +R +LHA ALRF +
Sbjct: 275 LNRLFLHAAALRFEH 289