Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., ribosomal large subunit pseudouridine synthase A from Phaeobacter inhibens DSM 17395

 Score = 69.3 bits (168), Expect = 6e-17
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   DILFTHPDFLLINKHPNVSVHKDDGDTM---LLQEVATQTGDGQLYLVHRLDKMTSGILL 59
           DIL      L++NK   +      G+ +   LL  +  Q    +  LVHRLD+ TSG+++
Sbjct: 15  DILHHDAQLLVVNKPHGLLSVPGRGEHLADCLLSRL--QAAFPEALLVHRLDRDTSGVMV 72

Query: 60  LARNATAASELSQGFAKRKVEKFYLAIGSKK----------------PKKKQGLICGDME 103
                 A   LS  F KR  +K Y+A    +                P + + ++C D  
Sbjct: 73  FGVTPHAQRHLSMQFEKRSAKKAYVARLDGRLEPRSGTVDLPLIVDWPNRPRQMVCHDTG 132

Query: 104 RSRRSSWKLVNSQENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDP 163
           +   + W+++  ++            AT  RL    P TG++HQ+RV + S+G AI+GDP
Sbjct: 133 KEAVTDWRVMKYEDT-----------ATRVRL---TPKTGRSHQLRVHMLSLGHAILGDP 178

Query: 164 IY--NTADESDRGYLHAFALRFTY 185
           +Y    A +  R  LHA  LR  +
Sbjct: 179 LYAEGRALDHPRMMLHAEELRIKH 202