Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 66.6 bits (161), Expect = 5e-16
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 3   DILFTHPDFLLINKHPNVSVHKDDG--DTMLLQEVATQTGDGQLY----LVHRLDKMTSG 56
           DI++     ++INK   + VH   G  D  L+  +     + +L     +VHRLDK T+G
Sbjct: 85  DIVYEDDHIIVINKQAGLVVHPGAGNSDGTLMNALLHHCPEIELVPRAGIVHRLDKDTTG 144

Query: 57  ILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERS-RRSSWKLVNS 115
           ++++A+   A + L      R++ + Y AI S       G++   + R   + +   V+ 
Sbjct: 145 LMVVAKTVEAQTHLVAALQAREITREYEAIVSGT-MTAGGVVDEPIARHPTKRTHMAVHH 203

Query: 116 QENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIY 165
              P++T +  A           +  TG+THQIRV +  IG  +VGDP+Y
Sbjct: 204 SGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHMAHIGHILVGDPVY 253