Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 75.9 bits (185), Expect = 9e-19
 Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 13/195 (6%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGDTMLLQEVATQTGDGQ--LYLVHRLDKMTSGILLLA 61
           ILF     +++NK   ++VH   G    + E        Q  L LVHRLDK TSG+LL+A
Sbjct: 108 ILFEDKAIIVLNKPAGIAVHGGSGVDFGVIEAMRSLRPQQKFLELVHRLDKETSGVLLIA 167

Query: 62  RNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWK---LVNSQEN 118
           +   A   L      +K++K Y+A+   + +    +I   + +    S +    VN +  
Sbjct: 168 KKRRALKHLHDQLRYKKMQKDYMALVRGEWQNHDKVINAPLLKLTLKSGERIVRVNQEGK 227

Query: 119 PAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADESD------ 172
           P+ T+F       G  L    P TG+THQIRV  +  G  I  D  Y+     D      
Sbjct: 228 PSETRFKIMQRYQGATLVQASPVTGRTHQIRVHCQYAGHPIACDEKYSEQKFDDAMRELG 287

Query: 173 --RGYLHAFALRFTY 185
             R +LHA  L+FT+
Sbjct: 288 LNRLFLHAAQLKFTH 302