Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 73.2 bits (178), Expect = 4e-18
 Identities = 62/195 (31%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGDTMLLQEVATQTGDGQLYLVHRLDKMTSGILLLARN 63
           I+   P  LL N       H D     LLQ         +  LVHRLD  TSGI++ A N
Sbjct: 24  IIINKPSGLLSNPGRAAETH-DCAINRLLQRFP------EAILVHRLDCATSGIMVFALN 76

Query: 64  ATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMER--------SRRSSWKLVNS 115
             A S L   F  R  EK+Y+A       + +GL+  D  +        S +   + +  
Sbjct: 77  KKAESHLKTQFQNRTTEKYYVA-------EVEGLMAQDSGKIELAMKPDSEQPPLQKIAE 129

Query: 116 QENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADE----- 170
              PA T F      +   L   KP TG+THQ+R+ +K++G  I+GD  Y   DE     
Sbjct: 130 DGKPATTYFEVLERRSNSTLVKLKPITGRTHQLRLHMKALGHTILGDDFY--GDEAIIAA 187

Query: 171 SDRGYLHAFALRFTY 185
           + R +LHA  L  T+
Sbjct: 188 APRLHLHAEHLSITH 202