Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., pseudouridine synthase Rlu family protein (RefSeq) from Shewanella loihica PV-4

 Score =  212 bits (540), Expect = 4e-60
 Identities = 109/227 (48%), Positives = 153/227 (67%), Gaps = 6/227 (2%)

Query: 1   MFDILFTHPDFLLINKHPNVSVHKDDGDTMLLQEVATQTGDGQLYLVHRLDKMTSGILLL 60
           M+ I+    DFL+I+K P V  H  DG   ++ ++ +   D +LY VHRLD MTSG+LL 
Sbjct: 1   MYKIIADETDFLVIDKAPGVHFHSQDGSAGVMAQLESDL-DIKLYSVHRLDTMTSGLLLF 59

Query: 61  ARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWKLVNSQENPA 120
           A+++ AA+  +Q F++ KV+K+YLA+   KPKKKQG I GDM +SRRS +KL+ S+ENPA
Sbjct: 60  AKSSEAAAAFTQRFSEHKVQKYYLALAKGKPKKKQGSIVGDMAKSRRSMYKLLRSKENPA 119

Query: 121 ITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADESDRGYLHAFA 180
           ITQFFS + A G RL+L KP +GKTHQ+RVAL S+G  I+GD +Y   +++DRGYLHA+A
Sbjct: 120 ITQFFSQSVAEGLRLYLLKPLSGKTHQLRVALASLGVPILGDQLYG-GEDADRGYLHAYA 178

Query: 181 LRFTYQGEVYQWLCDPRQFSHLGQKWHEEAVNQGIENWLSPWDLPWP 227
           L F +QG+ Y +   P Q    G+ +  + V   ++ W  P  L WP
Sbjct: 179 LGFEWQGQAYAYHQAPEQ----GEAFSLDGVKNQLQTWSKPEKLDWP 221