Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., pseudouridine synthase, RluA family from Sphingomonas koreensis DSMZ 15582

 Score = 72.8 bits (177), Expect = 8e-18
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 18/205 (8%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGD-------TMLLQEVATQTGDGQLY---LVHRLDKM 53
           I+F     ++I+K   + VH   G+        +L     + +G G +    +VHR+DK 
Sbjct: 87  IVFEDEHLIVIDKQAGLVVHPAAGNFDGTLVNALLHHCQGSLSGIGGVARPGIVHRIDKD 146

Query: 54  TSGILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWKL- 112
           TSG+++ A+   A   L++ F    +++ Y AI S +PK   G +   + RS ++  K+ 
Sbjct: 147 TSGLMVAAKTDRAHVGLARQFKAHSIDRRYKAIVSGRPKTGSGTVDAPLARSPQNRKKMA 206

Query: 113 VNSQENPAIT--QFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADE 170
           + +    A+T  +           L  C+  TG+THQ+RV + SIG  ++GDP+Y    +
Sbjct: 207 IVAGGKRAVTHWRLHELHELHEAALVECRLETGRTHQVRVHMASIGHPLIGDPVYGRTKK 266

Query: 171 SDRGYL-----HAFALRFTYQGEVY 190
             R  L     H  AL   + G ++
Sbjct: 267 EHRELLETLGFHRQALHAAHLGFIH 291