Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) from Paraburkholderia bryophila 376MFSha3.1

 Score = 74.7 bits (182), Expect = 3e-18
 Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 25/218 (11%)

Query: 3   DILFTHPDFLLINKHPNVSVHKDDGDTM--LLQEVATQTGDGQLYL-----VHRLDKMTS 55
           +I++     ++INK   + VH   G+    +L  +  + GD    L     VHRLDK TS
Sbjct: 144 EIVYEDDTLVVINKPAGMVVHPAAGNWSGTMLNGLLYRYGDAAAGLPRAGIVHRLDKETS 203

Query: 56  GILLLARNATAASELSQGFAKRKVEKFYLAI--GSKKPKKKQGLICGDMERSRRSSWKLV 113
           G++++AR   A ++L +    R V++ YLA+  G+   +       G   R R     + 
Sbjct: 204 GLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTRMAVVT 263

Query: 114 NSQENPAITQFFSAAAATGER----LFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTA- 168
            +   PA T F     A  +R       C   TG+THQIRV    IG  ++GDP+Y  A 
Sbjct: 264 GASGKPARTHFRRVDTAIWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPVYGRAR 323

Query: 169 ---------DESDRGYLHAFALRFTY--QGEVYQWLCD 195
                     E  R  LHA+ L   +   G   QW  D
Sbjct: 324 GKRSVTPLPGEFARQALHAWRLGLIHPKTGRTMQWRAD 361