Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., ribosomal large subunit pseudouridine synthase D (RefSeq) from Shewanella sp. ANA-3

 Score = 65.5 bits (158), Expect = 1e-15
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 3   DILFTHPDFLLINKHPNVSVHKDDGDT------MLLQEVATQTGDGQLYLVHRLDKMTSG 56
           DI++   D L+INK   + VH   G+        LL          +  +VHRLDK T+G
Sbjct: 85  DIVYEDDDILVINKQAGLVVHPGAGNADGTLMNALLHHCPNIEHVPRAGIVHRLDKDTTG 144

Query: 57  ILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERS-RRSSWKLVNS 115
           ++++A+   A + L      R++ + Y AI         G +   + R   + +   V+ 
Sbjct: 145 LMVVAKTVEAQTHLVAALQAREITREYEAI-VLGTMTAGGTVDEPIGRHPTKRTHMAVHH 203

Query: 116 QENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIY 165
              PA+T +  A           +  +G+THQIRV +  IG  +VGDP+Y
Sbjct: 204 SGKPAVTHYRVAEKFRNHTRLRLRLESGRTHQIRVHMAYIGHVLVGDPVY 253