Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score = 70.1 bits (170), Expect = 5e-17
 Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGDTMLLQEVATQTGDGQ--LYLVHRLDKMTSGILLLA 61
           IL      +++NK   ++VH   G    + E        Q  L LVHRLDK TSG+LL+A
Sbjct: 108 ILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLELVHRLDKDTSGVLLVA 167

Query: 62  RNATAASELSQGFAKRKVEKFYLAI-----GSKKPKKKQGLICGDMERSRRSSWKLVNSQ 116
           +  +A   +      +K++K YLA+      ++    KQ L+   ++   R     VN++
Sbjct: 168 KKRSALKHMHDQLRYKKMQKDYLALVKGEWSAQDKVVKQPLLKLTLKSGERI--VRVNAE 225

Query: 117 ENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYN--TADESDRG 174
             P+ T+F       G  L    P TG+THQIRV  + +G  I  D  Y+    D+S R 
Sbjct: 226 GKPSETRFKIVQRYQGCTLVQASPVTGRTHQIRVHCQYMGHPIACDEKYSEQAFDDSMRA 285

Query: 175 ------YLHAFALRFTY 185
                 +LHA  L F +
Sbjct: 286 LGLTRLFLHAAELMFIH 302