Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., Thiamin ABC transporter, transmembrane component from Pseudomonas fluorescens FW300-N2E2

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 11/216 (5%)

Query: 295 LPHKSILTLLFTISGAMIPLTLIWSLAQRWR---FPDLFPTQWTGQFWYDEWPNVLHNME 351
           L H++++ LLF I    +  TLI+S+A  W     P  F  +W  Q W D  P  LH   
Sbjct: 11  LYHRAVVYLLFAILLLPLAGTLIYSIASSWSATVLPSGFTFKWYVQLWSD--PRFLHAFG 68

Query: 352 TSVLLALGS--GSLALLLGIL-AQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVL--T 406
            S+L+ +G+   S+ L+L +L    Y      A+   +I LP  +P +    G+  L  +
Sbjct: 69  QSLLVCVGALVLSVVLILPLLFVVHYHFPKLDALMNILILLPFAVPPVVSSVGLLQLYGS 128

Query: 407 LLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYN-SNFSKIARSLGKSEWQIFWKIKL 465
             +A     W ++  +   A P +Y A++   Q+ N  +    A+ LG S +Q  + + L
Sbjct: 129 GPLAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLRDLMDAAQLLGASTFQAAFLVVL 188

Query: 466 PLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTI 501
           P L   L+ A  +  S    +++   +L G R  T+
Sbjct: 189 PNLRKGLMVALLLSFSFLFGEFVFANILVGTRYETL 224



 Score = 34.3 bits (77), Expect = 6e-06
 Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 31/234 (13%)

Query: 10  ILLCVAPILPGLAGVLIS--ASGYLPVLGHHHVSWQGFSQVWQWQGVEYA----LLLSVT 63
           + L  A +L  LAG LI   AS +   +     +++ + Q+W      +A    LL+ V 
Sbjct: 17  VYLLFAILLLPLAGTLIYSIASSWSATVLPSGFTFKWYVQLWSDPRFLHAFGQSLLVCVG 76

Query: 64  STLFSTYLALLMSFAILQRFWFHPRWKRIENSLSIL-LALPHVAFAIGFASLFASTGWLA 122
           + + S  L L + F +   F   P+   + N L +L  A+P V  ++G   L+ S G LA
Sbjct: 77  ALVLSVVLILPLLFVVHYHF---PKLDALMNILILLPFAVPPVVSSVGLLQLYGS-GPLA 132

Query: 123 RLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLS 182
            +               W++   Y    T+AL     PF+       LQ +NL  +   +
Sbjct: 133 MV------------GTPWILIGCY---FTVAL-----PFMYRAITNNLQAINLRDLMDAA 172

Query: 183 ASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSV 236
             LG S  Q  + +V P   + +   L    ++      F+ +L  T   T  V
Sbjct: 173 QLLGASTFQAAFLVVLPNLRKGLMVALLLSFSFLFGEFVFANILVGTRYETLQV 226