Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 227 a.a., Glycine betaine ABC transport system permease protein from Pseudomonas fluorescens FW300-N2E2

 Score = 46.6 bits (109), Expect = 1e-09
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 27/177 (15%)

Query: 316 LIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYR 375
           L +SL + W   D   T+     +Y            S+ LA+   ++AL LG+L   YR
Sbjct: 9   LWFSLPEHWLGEDGILTRLAEHIYY-----------VSLSLAIAC-AIALPLGVLMANYR 56

Query: 376 LHTQRAIPVYII--ALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLA 433
              Q AI ++ I  ALP L        GI +L +++     +  ++   T    P++   
Sbjct: 57  KGAQVAIGLFNIGRALPSL--------GIVILAIMLIGYETSTVIIALVTMSIPPILTNT 108

Query: 434 LSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPT 490
             G  Q  +S+    A+S+G   WQ+F +++LPL FP +      G   +L Q + T
Sbjct: 109 YVGIDQ-VDSSLKHAAKSMGMRRWQMFIQLELPLAFPLIF----SGFRSALVQLIAT 160