Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., ABC-type spermidine/putrescine transport system, permease component II from Pseudomonas stutzeri RCH2

 Score = 69.7 bits (169), Expect = 1e-16
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 28/280 (10%)

Query: 283 RAWQSSGRSHFPLPHKSILTLLFTISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYD- 341
           RAW      ++ L     L LLF I    +P+ +I  L+       ++P Q     WY+ 
Sbjct: 11  RAW------YYALRILCALVLLFLI----VPVLVIVPLSFNSGSFLVYPLQGFSMRWYEA 60

Query: 342 -----EWPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQ---RAIPVYIIALPMLL 393
                +W   + +++ S+L+A  +  LA++LG LA       +   +A+ + I+  PM++
Sbjct: 61  LFSSADW---MRSLKNSMLIAPAATFLAVVLGTLAAVGLTRAEFRGKALLMTILISPMVV 117

Query: 394 PQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLG 453
           P + +     +    +        ++  H     P V + +S   Q +N N  + A SLG
Sbjct: 118 PVVIIGVASYLFFAPLGMGNSYLSLILVHAVLGVPFVIITVSATLQGFNYNLVRAAASLG 177

Query: 454 KSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTITTEAVALSSGYD 513
            S    F+++ LPL+ P ++       + S  + + TL L G    T+  +   + SG  
Sbjct: 178 ASPLTAFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQITLPRQ---MFSGIR 234

Query: 514 RRVTAIYALCQALLPFVFFSIALLLGRMQIHRYRAAQLTT 553
             ++   A    LL  + FSIALLL  ++  R RA +L T
Sbjct: 235 ENLSPTIAAAATLL--IGFSIALLL-TLEWLRGRAEKLRT 271