Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 19/236 (8%)

Query: 330 FPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQ----EYRLHTQRAIPVY 385
           F  +W G    DE   +L     S  +A+ + SLA +LG LA      +     R +   
Sbjct: 42  FSAKWYGALLRDE--QMLGAAWMSFRIAVVNASLATILGTLAALAMVRFGRFRGRTLFSG 99

Query: 386 IIALPMLLPQLSLLFGIQVLTLLMASQAYTWW--------VVWAHTFFAFPLVYLALSGP 437
           +++ P+++P++  + G+  L L +A +    W        +  AH  F+   V + L   
Sbjct: 100 MLSAPLVMPEV--ITGLASLLLFVALEQLLGWPQGRGMTTITIAHITFSTAYVAVVLQSR 157

Query: 438 WQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGR 497
            Q  + +  + A  LG    ++F  I +P++ PAL+  W +  ++SL   +    + G  
Sbjct: 158 LQGMDRSIEEAAMDLGARPAKVFLLITIPVIAPALVAGWLLSFTLSLDDLVIASFVSGPA 217

Query: 498 LTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHRYRAAQLTT 553
            +T+    V  SS        I AL   L+     +I L+ G M   + RA+Q  T
Sbjct: 218 SSTL--PMVVFSSVRLGVSPEINALATILVLTATVAI-LIAGWMMTRQERASQKLT 270