Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 52/231 (22%), Positives = 105/231 (45%), Gaps = 18/231 (7%)

Query: 330 FPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPVY---- 385
           F  +W G+ + D+   +L  + TS+ +A  + ++A++LG +A        R+        
Sbjct: 46  FSAKWYGELFRDD--QILDAVATSLKVAFFASTMAVILGTMAAFVMTRFARSWGKMTLSN 103

Query: 386 IIALPMLLPQLSLLFGIQVLTLLMASQAYTWW-------VVW-AHTFFAFPLVYLALSGP 437
           +I  P+++P++  + G+ +L L +       W        VW AH+ F    V + +S  
Sbjct: 104 MITAPLVMPEV--ITGLSLLLLFVHMADLLGWPAERGMLTVWIAHSTFCAAYVAVVVSSR 161

Query: 438 WQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGR 497
            +  + +  + A+ LG +  + F+ I +P++ PAL+  W +  S+SL   +      G  
Sbjct: 162 LRELDMSIEEAAQDLGATPLKTFFHITVPMISPALIAGWLLSFSLSLDDLVIASFASGPG 221

Query: 498 LTTITTEAV-ALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHRYR 547
            TT+      ++  G   ++ A+  L   ++  + F I+  L R    R R
Sbjct: 222 ATTLPMVVFSSVRMGVSPKINALATLIILIVSLIAF-ISWYLARRADKRSR 271