Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., iron ABC transporter permease from Methanococcus maripaludis JJ

 Score = 48.5 bits (114), Expect = 7e-10
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 424 FFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVS 483
           FF    V L +SG        F   AR+LG +E+Q+F K+ LPLL P +L A  +    S
Sbjct: 165 FFIISAVLLGISG-------EFEDAARNLGSNEFQVFKKVTLPLLIPGILSAGLLIFMQS 217

Query: 484 LAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQI 543
           +A +   +++GG   T  T     +   Y+ ++ +  ++       +F S+AL     + 
Sbjct: 218 MADFGTPIIVGGNFNTLATASYFEIIGRYNTQMASTLSVI-----LLFPSMALFYLYSKY 272

Query: 544 HR 545
           H+
Sbjct: 273 HK 274



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 17/137 (12%)

Query: 350 METSVLLALGSGSLALLLGILAQEYRLHTQ----RAIPVYIIALPMLLPQLSLLFGIQVL 405
           ++ ++  AL S  L   LG+ A  Y ++      R +   +I LP  +P   +  G    
Sbjct: 345 IKNTLFYALSSSILVAFLGV-AYSYIIYRGKFFGRKLMDLVITLPFAIPGTFMGLGY--- 400

Query: 406 TLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARS-------LGKSEWQ 458
             L+A   Y   +    +      +   L   +++ NS  S+I  S       LG S  +
Sbjct: 401 --LLAFNNYPLLLTGTSSIIILNCMVRKLPFSFKTGNSVLSQIEESVEEASLNLGASRLK 458

Query: 459 IFWKIKLPLLFPALLYA 475
            F+K+ LPLL PA++++
Sbjct: 459 TFYKVVLPLLEPAIIFS 475