Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., sulfate ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 51.2 bits (121), Expect = 5e-11
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 25/204 (12%)

Query: 79  ILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEV 138
           +L R+ F  + K ++  + +  ALP     I   +L+++TGW+ + LY            
Sbjct: 103 VLVRYQFLGK-KVVDALVDLPFALPTAVAGIALVTLYSTTGWVGQYLY------------ 149

Query: 139 TWLVHDPYA-IGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASLGYSEPQMWWKIV 197
            W +   Y+ IG+ IAL    +PF++    P+L   +  +++  SASLG S      +++
Sbjct: 150 LWGIKVAYSEIGVVIALTYIGLPFVVRTVQPVLADFS-KELEEASASLGASRFTTIKRVI 208

Query: 198 FPQWLRKIRFTLFAVAAYAISVVDFSLVLG-----PTTPPTFSVLVWQWFNEPDLNLLPR 252
            P  L  +  T +A+ A+A +V ++  V+      P       +L+     + D N    
Sbjct: 209 LPAVLPAL-LTGYAL-AFARAVGEYGSVIFISGNLPYRTEITPLLIVSKAEQYDYN---G 263

Query: 253 AASGAVVLLLLASIVLVAIVALEW 276
           AA+  VV+L  A I+L+ I +L+W
Sbjct: 264 AAAIGVVMLAAAFILLLIINSLQW 287



 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 24/179 (13%)

Query: 339 WYDEW-----PNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQ---RAIPVYIIALP 390
           W D W     P V+ + + S   +    ++  + G L     +  Q   + +   ++ LP
Sbjct: 63  WADFWVAISHPQVVASYKLSFAASFIGATINAVFGTLVAWVLVRYQFLGKKVVDALVDLP 122

Query: 391 MLLPQLSLLFGIQVLTLL-----MASQAYTWW---------VVWAHTFFAFPLVYLALSG 436
             LP  + + GI ++TL      +    Y W          VV A T+   P V   +  
Sbjct: 123 FALP--TAVAGIALVTLYSTTGWVGQYLYLWGIKVAYSEIGVVIALTYIGLPFVVRTVQP 180

Query: 437 PWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGG 495
               ++    + + SLG S +    ++ LP + PALL  +A+  + ++ +Y   + + G
Sbjct: 181 VLADFSKELEEASASLGASRFTTIKRVILPAVLPALLTGYALAFARAVGEYGSVIFISG 239