Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.5 bits (145), Expect = 8e-14
 Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 24/224 (10%)

Query: 330 FPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPVY---- 385
           F  +W G+ + D+   +L  + TS+ +A  S ++A+++G +A       +R+        
Sbjct: 42  FSPKWYGELFKDQ--QILDAVWTSLRIAFYSSTMAVIIGTMAAFVMTRFKRSWAKLTLSN 99

Query: 386 IIALPMLLPQLSLLFGIQVLTLLMASQAYTWW-------VVW-AHTFFAFPLVYLALSGP 437
           +I  P+++P++  + G+ +L L +       W        VW AH+ F    V + +S  
Sbjct: 100 MITAPLVMPEV--ITGLSLLLLFVHMADLLGWPKERGMVTVWIAHSTFCAAYVAVVVSSR 157

Query: 438 WQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGR 497
            +  + +  + A  LG +  + F+ I +P++ PAL+  W +  S+SL   + +    G  
Sbjct: 158 LRELDRSIEEAAMDLGATPLKTFFLITVPMISPALVAGWLLSFSLSLDDLVISSFASGPG 217

Query: 498 LTTITTEAVALSS---GYDRRVTA---IYALCQALLPFVFFSIA 535
            TT+    V  SS   G   ++ A   +  LC +L+ F+ + +A
Sbjct: 218 ATTL--PMVVFSSVRLGVSPKINALATLIILCVSLIAFLSWYMA 259