Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., ABC transporter membrane protein from Klebsiella michiganensis M5al

 Score =  228 bits (581), Expect = 4e-64
 Identities = 181/553 (32%), Positives = 256/553 (46%), Gaps = 61/553 (11%)

Query: 2   LRTAYWGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLS 61
           LR   W  + L   P+LP  A +       LP L      WQ      Q+     AL  +
Sbjct: 9   LRLLTWAAVALIYLPLLPAAALMA------LPAL--RLSLWQSLFADPQFG---QALAAT 57

Query: 62  VTSTLFSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWL 121
           + STL S   AL+++  ++   W    W+R+   L +LLA+PHVAFA     LFA +GWL
Sbjct: 58  LVSTLLSVGGALIITLTVVAALWPSGGWRRLAARLPLLLAVPHVAFATAALLLFAESGWL 117

Query: 122 ARLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKML 181
           +RL    F L            D Y IGL + +A+KE  F+L +   +L +  L +   +
Sbjct: 118 SRL----FPLFSPPI-------DRYGIGLGLTMAMKESAFLLWVVYGLLGEKRLAEQATV 166

Query: 182 SASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQW 241
             SLGY   Q    +V P  L  +   L A AA+++S VD +LV+GP  PPT +VL WQW
Sbjct: 167 LKSLGYGRWQCLTWLVLPTLLPALSVVLLATAAWSLSAVDVALVIGPGNPPTLAVLAWQW 226

Query: 242 FNEPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSIL 301
            ++ D     + A  +++LLL  +++ +A   +  L+ R     +   R           
Sbjct: 227 LSQGDERQQAKGALASLILLLALAMMALAAWGVWRLWRRRIPPVEGIRRPQPRALAGKSF 286

Query: 302 TLLFTISGAMIPLTLIWSLAQRWRFPD-LFPTQWTGQFWYDEWPNVLHNMETSVLLALGS 360
            LL  + G    L L  +        D +  + W G                  L +   
Sbjct: 287 ALLLPLCGVACALLLAAAAQNSQPVHDSVGNSLWLG------------------LCSAAI 328

Query: 361 GSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTW---- 416
           G++  LL +     R           I LP++LP L L+ G   L L      YTW    
Sbjct: 329 GAVICLLWLALGPSRFGEW-------IWLPLILPALPLVDGQYQLAL------YTWLDGE 375

Query: 417 --WVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLY 474
              V+W H  +  P +   L   W++ +     +AR+LG    +IFW + LP L   LL 
Sbjct: 376 RLTVLWGHLLWVVPWMLFILRPAWRARDPRAELVARTLGWQRGRIFWLVTLPALTRPLLT 435

Query: 475 AWAVGISVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSI 534
           A AVG SVS+AQYLPTL LGGGR+ T+T+EAVALSSG D    A  AL Q LLP +FF+ 
Sbjct: 436 ALAVGFSVSIAQYLPTLWLGGGRVATLTSEAVALSSGGDTSTLAAQALWQLLLPALFFAA 495

Query: 535 ALLLGRMQIHRYR 547
             LL  + I  YR
Sbjct: 496 TALLAWL-IGHYR 507



 Score = 42.4 bits (98), Expect = 4e-08
 Identities = 71/267 (26%), Positives = 103/267 (38%), Gaps = 42/267 (15%)

Query: 296 PHKSILTLLFTISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVL 355
           P +  L LL   + A+I L L+   A     P L  + W   F   ++   L     S L
Sbjct: 4   PLRHALRLLTWAAVALIYLPLL-PAAALMALPALRLSLWQSLFADPQFGQALAATLVSTL 62

Query: 356 LALGSGSLALLLGILAQEY----------RLHTQRAIPVYIIALPMLL-----PQLSLLF 400
           L++G G+L + L ++A  +          RL    A+P    A   LL       LS LF
Sbjct: 63  LSVG-GALIITLTVVAALWPSGGWRRLAARLPLLLAVPHVAFATAALLLFAESGWLSRLF 121

Query: 401 ----------GIQV-LTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIA 449
                     GI + LT+ M   A+  WVV+             L G  +   +  + + 
Sbjct: 122 PLFSPPIDRYGIGLGLTMAMKESAFLLWVVYG------------LLG--EKRLAEQATVL 167

Query: 450 RSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTITTEAVALS 509
           +SLG   WQ    + LP L PAL        + SL+     L++G G   T+   A    
Sbjct: 168 KSLGYGRWQCLTWLVLPTLLPALSVVLLATAAWSLSAVDVALVIGPGNPPTLAVLAWQWL 227

Query: 510 SGYDRRVTAIYALCQALLPFVFFSIAL 536
           S  D R  A  AL   +L      +AL
Sbjct: 228 SQGDERQQAKGALASLILLLALAMMAL 254