Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., ABC transporter, permease protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 6/228 (2%)

Query: 324 WRFPDLFPTQWTGQ--FWY-DEWPNVLHNMETSVLLALGSGSLALLLGIL---AQEYRLH 377
           W +PDL+P  ++ +   W  D  P V+ ++  SV  AL +  L L++ +L   A  + L 
Sbjct: 414 WSWPDLWPRDFSPRTVLWLMDNGPVVMRHLAWSVWYALLTTGLCLVVCLLPARALAFGLV 473

Query: 378 TQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGP 437
               +   ++  P LLP +    G+  + +       T  VV      +FP +  AL   
Sbjct: 474 PSGPLVEGLLLSPALLPAMGFALGLYGVFVRSGLADTTVAVVLVLAVVSFPYMLRALMVG 533

Query: 438 WQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGR 497
           WQ+   ++++ A +LG    +    ++LPLL PA++   +V   V+ + Y    ++GGG 
Sbjct: 534 WQTVGPDYARCAANLGAGPLRTLLAVELPLLLPAVVAGGSVVFLVAFSDYFLVYLVGGGL 593

Query: 498 LTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHR 545
           + + T     +    DR + A+  L    +P + F +   L    +HR
Sbjct: 594 VPSFTGFLFPVLQSGDRSLAALLTLVFMAVPVLLFVLVEGLTLYFMHR 641



 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 122/540 (22%), Positives = 208/540 (38%), Gaps = 63/540 (11%)

Query: 41  SWQGFSQVWQWQ-----GVEYALLLSVTSTLFSTYLALLMSFAILQRFWFHPR-WKRIEN 94
           S QG   ++ W+     G   +LL  V     S  +++++        W  PR W+    
Sbjct: 16  SAQGGLSLYGWRTLLHGGAADSLLYGVRVAGLSAAISVVLGMVAAYGVWRLPRRWQWAGL 75

Query: 95  SLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWLVHDPYAIGLTIAL 154
              + L LPH+A A     + A +G L+ L Y    +     +   L++     G+ IA 
Sbjct: 76  LPRVPLILPHIAVAWLVVLVCARSGVLSSLSY-ALGMTAGQGDFPALLYGGDGWGMIIAY 134

Query: 155 ALKEVPFILLISLPILQQLNLTKMKMLSASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAA 214
             KE PF++L+ +  L++L+   ++M    LG    + +  +V P     +R  L  +  
Sbjct: 135 VWKETPFVMLLVVASLRRLDPRLVEM-GRMLGGGRWRTFRAVVLPHVAPVLRVCLVILFL 193

Query: 215 YAISVVDFSLVLGPTTPPTFSVLVWQWFNEPDLNLLPRAASGAVVLLLLASIVLVAIVA- 273
           YA+  V+   VLG T P    +  +  F   D    P AA   +  L +  + +VA+ A 
Sbjct: 194 YALGAVEVPFVLGETRPVMPGIAAYNAFFHGDFAGRP-AAMALLSALFVFGVGVVALYAF 252

Query: 274 LEWLFTRGYRAWQSSGRSH-FPLP-------HKSILTLLFTISGAMIPLTLIWSLAQRWR 325
           LE     G    +  GR+    LP       + S     +  SG ++     W+  +   
Sbjct: 253 LEGRCLSGLLTGRVMGRAQDGRLPSDPMQDGYPSGRQQDWRHSGDLLSSACRWAAMRAAS 312

Query: 326 FPDLFPTQWTGQFWYDEWPNVLH-----------NMETSVLLALGSGSL--------ALL 366
            PD+   +W+      +WP                 E + + A G G           L 
Sbjct: 313 VPDVRGRRWS---MGGQWPMARQVSLSRRFLSATGAEGASVPAAGQGGRMEPRASGGTLR 369

Query: 367 LGILAQEYRLHTQRAI-PVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFF 425
            G      R  +Q ++ P  + A  + +  L LL     L + +A+  ++W  +W   F 
Sbjct: 370 TGHGLPHSRFRSQESVRPALVTAALVAVFVLPLL----ALVVQVAAPVWSWPDLWPRDFS 425

Query: 426 AFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPL---LFPALLYAWAVGISV 482
              +++L  +GP          + R L  S W       L L   L PA   A+ +  S 
Sbjct: 426 PRTVLWLMDNGP---------VVMRHLAWSVWYALLTTGLCLVVCLLPARALAFGLVPSG 476

Query: 483 SLAQYL---PTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLG 539
            L + L   P L+   G    +    V + SG      A+  L  A++ F +   AL++G
Sbjct: 477 PLVEGLLLSPALLPAMG--FALGLYGVFVRSGLADTTVAV-VLVLAVVSFPYMLRALMVG 533