Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., spermidine/putrescine transport system permease protein potC from Caulobacter crescentus NA1000

 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 346 VLHNMETSVLLALGSGSLALLLG----ILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFG 401
           +L     S+ +A  S  ++L LG    +    +R   + A+    +ALP+++P++ +  G
Sbjct: 73  LLEAFGNSLTIAAASTVISLFLGAAVALALWRFRFPGKTAVDG-AMALPIVVPEICM--G 129

Query: 402 IQVLT----LLMASQAYTW-----WVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSL 452
           + +L     +L   Q   W      ++ AH  F+FP V + +     S+N    + AR L
Sbjct: 130 VAMLVFFAKVLPWPQGMPWPLNLGAIIIAHVSFSFPFVAVVVRARMASFNREMEEAARDL 189

Query: 453 GKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTITTEAVAL 508
           G  E++    + LP + P+L+    +  ++SL  ++ T    G    T   +  ++
Sbjct: 190 GAGEFRTIKDVILPHMAPSLIAGALLAFTLSLDDFVITFFTAGPDTVTFPVKVYSM 245