Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 907 a.a., ABC-type multidrug transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  155 bits (392), Expect = 4e-42
 Identities = 108/372 (29%), Positives = 181/372 (48%), Gaps = 14/372 (3%)

Query: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62
           SL R+ AV  +E ++L RD++     ++  L  +++FGF I+ DV  +     DQ  S  
Sbjct: 535 SLGRLWAVASREGKELLRDKVRMAFALLGALFMMVVFGFGISLDVEKLAFAAYDQDQSPQ 594

Query: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRELG 118
           SR  +E+ + ++    +       E  + +   +I+ AL +P     DL A   +Q  +G
Sbjct: 595 SRAYLEAFRSSRYFEEQPIISDAKELHRRLQRSEIKLALEIPPGFGRDLYAG--RQPTVG 652

Query: 119 QWLIDGSDTMIAGALLGLKNMPLTDLPTLG-IQPLTP------TFEITLLYNPSRRSAVN 171
            WL  G       +   ++ +   +L  L  +    P      T E    YN    S   
Sbjct: 653 AWLDGGIPFRAETSRNYVQAVHQANLEQLAELSSRAPNRQPGATLETRFRYNQDVVSVNA 712

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
           I PG++ +IL     + T+  IVRE+E G++     TP+  +E ++GK VPY+ V LI +
Sbjct: 713 IGPGVMALILAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQVPYLAVSLINL 772

Query: 232 AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFIL-L 290
           A++  +  ++F VP  G+   +  G LL++ A+ ++GL+IS    TQ+ A+  T+ I  L
Sbjct: 773 ALLTAMNRWLFGVPFKGSGLTLAIGGLLYVLATTSMGLLISAFTRTQIAAILGTMIITSL 832

Query: 291 PSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTL 350
           P+I  SG + P   +  AA  + +L PA +F+ +  G   +  DL  LW   L L  F L
Sbjct: 833 PTIQFSGLIVPRSSLEGAAAVMGQLFPAGYFLDIAVGTFTKALDLRQLWPQCLALGGFFL 892

Query: 351 FGLMLAALRFKK 362
               L+ +  KK
Sbjct: 893 GFTGLSLIMLKK 904