Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., ABC-type multidrug transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (278), Expect = 3e-29
 Identities = 99/375 (26%), Positives = 173/375 (46%), Gaps = 16/375 (4%)

Query: 1   MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDS 60
           M++L  I  + +KE   L  D +    +     + + +        V N  + +VD+  S
Sbjct: 1   MHTLSHIWRLGLKELTSLRYDSVLLLFLGYAFTVAIYMPAAGSVIGVHNASVAIVDEDQS 60

Query: 61  SFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRE 116
             SR L + ++  +        L   E +K + SG     + +P+    DL+A  +   +
Sbjct: 61  HLSRQLAQLLQPPEFQNPVA--LPYAELDKVMDSGRYTFVINVPANFQADLLAGREPTLQ 118

Query: 117 LGQWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPG- 175
           L       S   +    +G   +   +L T   Q  T       L   S  +  N+  G 
Sbjct: 119 LNVDATAMSQAFMGAGYIG--RIFQQELTTYAGQAQTSEATPVRLTTRSLFNT-NLEGGW 175

Query: 176 LLGVI-----LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQ 230
            L VI     +T+  I+ T  A++RERE G L+ L+  P+ ++E+M+ KI   + V ++ 
Sbjct: 176 FLAVIQIVNNITILAIILTGTALLREREHGTLDHLLVLPLTALEIMLAKIWSNLLVVVLC 235

Query: 231 V-AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFIL 289
             A +  +  F   VP+ G++   L  T L++ AS +LG+ ++T+A +  Q   + + ++
Sbjct: 236 TWASLEIIVKFALGVPLAGSMVLFLLVTALYLFASTSLGIFLATLARSTPQFGLLAIPVI 295

Query: 290 LPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFT 349
           +P +LLSG   P + MP   QW+ +  P+TH++ L   I+ R A    +W D L LA   
Sbjct: 296 IPMLLLSGGSTPLDSMPQWLQWVMQGSPSTHYVSLSAAILFRDAGPGVIWPDLLALAAIG 355

Query: 350 LFGLMLAALRFKKSL 364
           L    +A  RF+KSL
Sbjct: 356 LLFFAIALARFRKSL 370