Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC-type multidrug transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  100 bits (249), Expect = 6e-26
 Identities = 100/379 (26%), Positives = 164/379 (43%), Gaps = 46/379 (12%)

Query: 12  VKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVK 71
           +KE R L RD     +++    + +     AI        I VVD+  S  S  ++ + +
Sbjct: 16  LKELRSLYRDPAMLVLIIYSFTLAIYEGATAIPEAPHRASIAVVDEDRSQASLRIINAFQ 75

Query: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILP----SDLVARSQQQRELGQWLIDGSDT 127
           +   I  K   +T+ + +  +  G     L +P     DL+A  Q   +L    +D   T
Sbjct: 76  LPYFIEPKA--ITLQKMDSGMDDGLYTFTLNIPPRFQQDLLAGRQPTIQLN---VDA--T 128

Query: 128 MIAGALLGLKNMPLTDLPTLGIQPL--TPTFEITLLYNPSRRSAVNIV------PGL--- 176
            ++ A  G  +          IQ +  + T E    Y  S    V  V      P L   
Sbjct: 129 QVSQAFTGAGH----------IQQIIASETAEFVRRYRSSDALPVEAVVRTAFNPNLSRA 178

Query: 177 -LGVI------LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLI 229
             G +      +TM  I+ T AA++RERE G +E L+  PV   E+M+GK+     +GL+
Sbjct: 179 WFGAVNEVINQITMLAIILTGAALIREREHGTIEHLLVMPVTPFEIMVGKVWA---MGLV 235

Query: 230 QVAIILGLGHFIFA----VPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMT 285
            +A       F+      +PI G+L     G  L + A+ ++G+   T+A +  Q   + 
Sbjct: 236 VLAAAAFALRFVVEGWLNIPIQGSLWLFAGGAALHLFAATSMGIFFGTVARSMPQLGLLV 295

Query: 286 VFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWL 345
           +  L+P  +LSG + P E MP   Q +  + P THF+ L + I+ R A  + +W   L L
Sbjct: 296 ILTLIPLQILSGGVTPRESMPELVQNIMLVAPTTHFVELAQAILFRSAGPSIVWPQLLAL 355

Query: 346 ALFTLFGLMLAALRFKKSL 364
           A+      + A  R + SL
Sbjct: 356 AVIGTVFFLGALSRLRVSL 374