Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 913 a.a., ABC-type multidrug transport system, ATPase component from Pseudomonas stutzeri RCH2

 Score =  148 bits (373), Expect = 7e-40
 Identities = 103/369 (27%), Positives = 194/369 (52%), Gaps = 13/369 (3%)

Query: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62
           SL R+ +   +E  +L RD I   + ++  ++ + + G+ ++ DV N+   V+D+  ++ 
Sbjct: 542 SLRRLLSYTRREAMELRRDPIRATLAMLGSVLLMFIMGYGVSFDVENLTYAVLDRDQTTT 601

Query: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQ--W 120
           S+  + ++  ++    K       E ++ + S DI  A+ +P +   R  ++  + Q  +
Sbjct: 602 SQHYLLNMSGSRYFIEKAPLANHAELDQRMRSNDISLAVEIPPNF-GRDLKRGAVPQVAF 660

Query: 121 LIDGSDTMIAGALLG-LKNMPLTDLPTLGIQP-----LTPT-FEITLLYNPSRRSAVNIV 173
            IDG+  M A  + G ++ + LT L  L  +      L P    I   YNP  +S   + 
Sbjct: 661 WIDGAMPMRADTIKGYVQGIHLTYLQQLAREAGVNGQLAPADVAIRYRYNPDVQSLPAMA 720

Query: 174 PGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAI 233
           P ++ ++L M   + T+  +VRE+E G++     TP   +E ++GK +PYI +G+   A 
Sbjct: 721 PAMIPLLLMMIPAMLTALGVVREKELGSITNFYVTPTTRLEFLLGKQLPYIALGMFNFAT 780

Query: 234 ILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAM-QMTVFILLPS 292
           +  L  F+F +PI G++  +  G LL+++ +  LGL++S+I N+Q+ A+   T+  LLP+
Sbjct: 781 LALLAVFVFGIPIKGSILTLCLGALLYVTCATGLGLLMSSILNSQIAAIFGTTIVTLLPA 840

Query: 293 ILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWR--DTLWLALFTL 350
           I  SG + P   M  A  ++ +L P +HF+ + RG+  +   LA+L+     + LA+  L
Sbjct: 841 IQFSGLIHPVSAMEGAGAFIGKLYPTSHFLIISRGVFSKALGLAELYPYFIPMLLAIPLL 900

Query: 351 FGLMLAALR 359
             L +A LR
Sbjct: 901 TLLSVAGLR 909