Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter, permease protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  430 bits (1106), Expect = e-125
 Identities = 217/372 (58%), Positives = 280/372 (75%), Gaps = 12/372 (3%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           RI A+L KE +QLSRDR+TFGM+VMIPL+QL+LFG+AINTD R++P G+VD S +S  R 
Sbjct: 4   RILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVDMSGNSQGRA 63

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSD----LVARSQQQ------- 114
           LV++V  TQV+   + Y ++ +AE+AI +G ++AAL++P+D    L++  Q Q       
Sbjct: 64  LVQAVSATQVVDFIESYQSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQGAYF 123

Query: 115 -RELGQWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIV 173
            R + QWL+DGSDT++A  +  L+ MPL+++  L +   T T E+ + +NP +R+ VNIV
Sbjct: 124 SRPVAQWLVDGSDTVVASTIKSLRTMPLSEVLGLPVPESTATMEVVMYFNPEQRTVVNIV 183

Query: 174 PGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAI 233
           PGLLGVILTMTM+LFTSAAIVRERE+GN+E LITTPV  +ELM+GKI+PY+ VG +QVAI
Sbjct: 184 PGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQVAI 243

Query: 234 ILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSI 293
           ILG G  +FA+PI G L  +    +LFI ASLTLGLVISTIA TQLQAMQMTVFILLPSI
Sbjct: 244 ILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILLPSI 303

Query: 294 LLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGL 353
           LLSGFMFPYE MP  AQW++E LPATHFMR+ R I+LR A++  L  D LWL  F   GL
Sbjct: 304 LLSGFMFPYEAMPVPAQWIAEALPATHFMRMSRAIILRDAEVTQLGFDALWLLGFCALGL 363

Query: 354 MLAALRFKKSLD 365
           ++A L+F K LD
Sbjct: 364 LVATLKFNKRLD 375