Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  269 bits (687), Expect = 1e-76
 Identities = 150/373 (40%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62
           S  R+ A+  KE  Q+ RDR+TFGM++ +P++QL+LFGFAINTD +++   +  QS S+F
Sbjct: 6   SFSRMAAIFFKELIQMRRDRLTFGMMLSVPMLQLILFGFAINTDPKHLATVLNIQSPSAF 65

Query: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQ-QRELGQWL 121
           SR L  ++  +    +     +  E ++ +  G+++  L +P +  +  Q+  R +    
Sbjct: 66  SRDLTAAMSNSGYFDIIGEVSSEAEIDRLLDMGEVQFVLTIPPEFSSELQKGNRPVVLME 125

Query: 122 IDGSD-TMIAGALLGLKNMPLTDLPTLGIQPLTPT--------FEITLLYNPSRRSAVNI 172
           +D +D    + AL  +  +  T      + PL P           I   YNP   S  N+
Sbjct: 126 VDATDPAATSNALHVIGQLARTAFDRHLVGPLAPLKVGEDPIDLRIHSRYNPEANSQYNV 185

Query: 173 VPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVA 232
           VPGL+GVILTMTM++ TS AI RERER  +E L++ PV  +E+MIGKI+PYI +G IQ+ 
Sbjct: 186 VPGLMGVILTMTMVMMTSLAITRERERDTMETLLSMPVRPLEVMIGKILPYIGLGYIQII 245

Query: 233 IILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPS 292
           ++L     +F VP+ G+L  +    LLFI+A+L +GL  S ++  Q QAMQM+ F  LP+
Sbjct: 246 VVLIAARLLFDVPVVGSLGLLALLLLLFIAANLAIGLTFSALSANQFQAMQMSFFYFLPA 305

Query: 293 ILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFG 352
           +LLSGFMFP+ GMP  AQ L E+LP THF+R++RGI+L+G     +W +    ALFTL  
Sbjct: 306 LLLSGFMFPFRGMPVWAQVLGEILPLTHFLRVVRGILLKGNGFWQVWPELWPQALFTLVA 365

Query: 353 LMLAALRFKKSLD 365
             +A   F+K+LD
Sbjct: 366 FAIALKVFRKTLD 378