Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  157 bits (398), Expect = 3e-43
 Identities = 99/341 (29%), Positives = 178/341 (52%), Gaps = 12/341 (3%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R  A++ KE  Q+ RD  +  +  ++P I + LFGFA++ D +   IG+V +S +  ++ 
Sbjct: 11  RFLALVRKEVFQILRDPSSILIAFVLPFILIFLFGFAVSLDAKRTKIGLVVESPTPLTQD 70

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVA-RSQQQRELGQWLIDG 124
           L  S + ++   V + Y      E  + +G ++  +++P+   A ++ Q R   Q ++DG
Sbjct: 71  LAASFQGSRYFEVTRGY-DRRPFEDDLVAGRLKGIVVIPATFAADQATQARPALQVIVDG 129

Query: 125 SDTMIAGALLGLKNMPLTDLPTLGI---QPLTPTFEITLLY--NPSRRSAVNIVPGLLGV 179
           SD   A  +       +     +     +   P   I   Y  NP   S   +VPG + +
Sbjct: 130 SDPNTANFVQNYAKGVVETWSRISAGDAKAAAPAIAIEQRYWFNPELESRNFLVPGSIVI 189

Query: 180 ILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGH 239
           ++T+   L TS  + RE ERG +E ++ TPV ++EL++GK++PY F+GLI + + + L  
Sbjct: 190 VMTLVGTLLTSLVVAREWERGTMEAMMATPVTALELLVGKVLPYFFLGLISMTLCVLLAV 249

Query: 240 FIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMT-VFILLPSILLSGF 298
           F F VP  G++  +   + +F+  +L  GLVIS +   Q  A Q+  +   LPS +LSGF
Sbjct: 250 FAFGVPFRGSVLALYMISAIFLLPALGQGLVISAVTKNQFLASQLALISAFLPSFMLSGF 309

Query: 299 MFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLW 339
           +F  + MP   Q ++ ++ A + +  ++ + L G    D+W
Sbjct: 310 LFEIDSMPRLIQAITTIVAARYVIPSLQTVFLAG----DIW 346