Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  152 bits (385), Expect = 1e-41
 Identities = 102/368 (27%), Positives = 194/368 (52%), Gaps = 10/368 (2%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+KA++VKEF  + RD     ++++ PL+QL +F +A   +V+N  I ++++    +   
Sbjct: 6   RLKALIVKEFLAILRDPKGRMILIVPPLLQLFVFSYATTLEVKNADIILLNRDSGGWGWE 65

Query: 66  LVESVKVTQVIRVKQHYLTVNEAE-KAIASGDIRAALILPSDLVARSQQQRELG--QWLI 122
           LV+ +  T  I   +  +T + A+ +A   G    A +      +R  +       Q L+
Sbjct: 66  LVQRLDGTPTIG--RILITGDPAQVRAAIDGQRVLAAVEIGPAFSRDIEAGRPATVQILL 123

Query: 123 DGSDTMIAGALLGLKNMPLTDLPT-----LGIQPLTPTFEITLLYNPSRRSAVNIVPGLL 177
           DG  +  A  + G  N  + DL          +   PT      +NP+  S   +VPGL+
Sbjct: 124 DGRRSNAAQIVAGYLNQIVADLAAETPRGRRTEAKAPTVIARSWFNPNLLSQWAMVPGLV 183

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
            +I  +T ++ T+ +I RERE G  + L+ +P+ + E++ GK++P I +GL  +   L +
Sbjct: 184 AIIALLTGLVVTALSIAREREFGTFDQLMVSPLRTHEILAGKMIPPILIGLAHITAFLVV 243

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSG 297
             F+F +P  G+L  +   ++++++A + LGL IS ++ TQ QA+     +++P +LLSG
Sbjct: 244 SIFVFEIPFRGSLFVLYGSSVVYLAAVVGLGLFISALSMTQQQAILGAFMLMVPMVLLSG 303

Query: 298 FMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAA 357
           F  P + MP   Q L+ L P  +++ +++G+ L+   L ++  + + LA   +  L  AA
Sbjct: 304 FASPIDNMPEWLQPLTRLDPLRYYLVIVKGLFLKDLALTEVIANVVPLAAIAVVTLGAAA 363

Query: 358 LRFKKSLD 365
             F++ ++
Sbjct: 364 WLFRRRME 371