Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  111 bits (277), Expect = 4e-29
 Identities = 101/375 (26%), Positives = 169/375 (45%), Gaps = 38/375 (10%)

Query: 12  VKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVK 71
           +KE R L RD +   +++     Q+ +   A+   +    I VVD+  S  S  ++ +  
Sbjct: 11  IKELRGLIRDPMLMVLIIWAFTFQIYIGSKAVPETLNQAAISVVDEDRSPVSSRIITAF- 69

Query: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRELG--------- 118
           V     + +  +T  + ++ + +G    AL +P     DL+A      +L          
Sbjct: 70  VPPYFSIPR-MITQQQMDRRMDAGTDTFALDIPPNFQRDLLAGKSPTIQLNIDATRMTQA 128

Query: 119 -------QWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVN 171
                  Q ++ G  T       G  ++P+          L   F   L  N     AVN
Sbjct: 129 FTGGGYIQSIVSGEVTEFLNHYRGTTSVPVD-------MALRVRFNAEL--NKGWFGAVN 179

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLI-- 229
            V       +TM  I+ T AA++RERE G +E L+  PV   E+M  KI     V L+  
Sbjct: 180 EVI----TAITMLSIILTGAALIREREHGTIEHLLVMPVTPFEIMASKIWSMGLVVLVAS 235

Query: 230 QVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFIL 289
            V++++ +  ++ +VP+ G+L   LFG +L + A+  +G+ ++T+A T  Q   + + IL
Sbjct: 236 SVSLVIVVQGWL-SVPVQGSLLLFLFGAVLHLFATTCMGIFLATVAGTMPQFGLLLMLIL 294

Query: 290 LPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFT 349
           LP   LSG + P E MP   Q L    P THF+ L + ++ R A L  +W   L L L  
Sbjct: 295 LPLQALSGSLTPRESMPEIIQTLMLAAPNTHFVILAQSVLFRSAGLDVVWPQLLALTLIG 354

Query: 350 LFGLMLAALRFKKSL 364
               +++  RF++ L
Sbjct: 355 SILFLISLKRFREFL 369