Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 904 a.a., ribosome-associated ATPase/putative transporter RbbA from Rhodopseudomonas palustris CGA009

 Score =  143 bits (360), Expect = 2e-38
 Identities = 100/369 (27%), Positives = 183/369 (49%), Gaps = 15/369 (4%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+ A   +E  ++ RDR+     ++ PL+ +L FGF I+ DV N+   V DQ ++  SR 
Sbjct: 536 RLWAYARRETMEILRDRLRLAFAILGPLVLMLTFGFGISFDVENLTYAVYDQDNTLESRE 595

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRELGQWL 121
           L+ES   ++  +      +  E ++ +ASG+++  + +P     DL+  + +  E+  W 
Sbjct: 596 LLESFSGSRYFQQAPDIKSAAEIDRRLASGELKLVIEVPHGFGRDLL--TNKSPEVAVW- 652

Query: 122 IDGSDTM----IAGALLGLKNMPLTDLPTLGIQ--PLTP-TFEITLLYNPSRRSAVNIVP 174
           IDG+       I   + GL    L +         P  P   E    YN + +S  +I+P
Sbjct: 653 IDGAMPFRAETIRSYVTGLSQAYLAEQYRRHAMASPTAPINIETRFRYNQAFKSVYSIIP 712

Query: 175 GLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAII 234
           G++ +IL +   + T+  +VRE+E G++    +TPV + E ++GK +PY  +      ++
Sbjct: 713 GVITLILMLIPAMLTAVGVVREKEVGSITNFRSTPVTATEFLLGKQIPYALLSFFSFLLL 772

Query: 235 LGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFI-LLPSI 293
           L     IF VP+ G++  ++ G LL++ ++  LG++ S+  +TQ+ A+ +   I ++P++
Sbjct: 773 LLGAIVIFGVPVRGSVIALVGGALLYVFSTTALGVLFSSFLSTQIAAIFIVAIISIIPAV 832

Query: 294 LLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGL 353
             SG + P   +    +   E  PA  F  +  G   +G     L  + L L  F L  L
Sbjct: 833 NFSGLLVPVSSLSQVGRLFGEAFPAAWFQEVSIGAFTKGMGFWMLAPNLLILFGFGLVYL 892

Query: 354 MLAALRFKK 362
           + A L  +K
Sbjct: 893 IGAILALRK 901