Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 6e-27
 Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 31/375 (8%)

Query: 10  VLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDV-RNIPIGVVDQSDSSFSRLLVE 68
           ++ +E R+L +      +V  +PL+  L   +  +  + R +P+ VVDQ  S  SR+LV 
Sbjct: 4   LITRELRRLWQSPWQLALVSYLPLLGTLALWWLFSAGLPRALPVAVVDQDQSQLSRMLVR 63

Query: 69  SVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILP----SDLVARSQQQREL---GQWL 121
            +    VI     Y  + +A+ A+   +  A ++LP     DL+   Q   ++    Q+L
Sbjct: 64  QLSANSVISPVS-YQDIGQAQAAMERAEAYAMVVLPFKLNQDLMIGHQPSIDIRYNAQFL 122

Query: 122 IDG---SDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITL-------LYNPSRRSAVN 171
           + G   S  +      GLK          G+ P+     + L       LYN +      
Sbjct: 123 LVGKLLSSQIQLSLADGLKQKARLKQLASGVPPVQAEINLNLIKTQSSALYNANNNYVAF 182

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
           +VP +L  ++ +  +L  + A+  E  R  L    +   + +  ++ K++ Y  + ++Q+
Sbjct: 183 LVPPILIALVQIVAMLVFANALTEELRRETLAEWFSLGTYRV--LLSKVLVYTPLLMLQL 240

Query: 232 AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLP 291
            ++    +    +P+ G L Q+L   L+ + A   + L I  +     + +     +  P
Sbjct: 241 GLVYAWLYGYLGLPMRGGLGQLLIAQLVMLLAVWLIVLTIFALLQDSARVISFCTALFAP 300

Query: 292 SILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRG-------ADLADLWRDTLW 344
           S    G  FP   MP  AQW  +++P++H++    G++  G       + L+  W    +
Sbjct: 301 SFAFMGVTFPTHEMPLLAQWWRQIMPSSHYVNTHIGVIAYGQETQALVSQLSSYWG---F 357

Query: 345 LALFTLFGLMLAALR 359
           L L  +  LMLA +R
Sbjct: 358 LLLLPVIALMLAKMR 372