Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., ABC-type multidrug transport system, permease component from Dechlorosoma suillum PS

 Score =  110 bits (276), Expect = 5e-29
 Identities = 93/369 (25%), Positives = 174/369 (47%), Gaps = 26/369 (7%)

Query: 12  VKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVK 71
           +KE R L  D++   ++V      +      ++ ++RN P+ VVD+  S  S  L+ ++ 
Sbjct: 15  LKELRSLWADKVLLVLIVWAFTGGIYSAAKGVSQELRNAPVAVVDEDRSPLSARLIGAL- 73

Query: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRE-----------LGQW 120
            T         +++ + ++A+  G    +L++P++     ++ R            + Q 
Sbjct: 74  -TPPYFKTPDLISMAQMDRALDQGRYSFSLVIPANFQRDLKEGRRPTLQLNIDATVMSQS 132

Query: 121 LIDGS--DTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLG 178
            I  S   +++AG L    N  LT        P+  T  +   +NP+         G++ 
Sbjct: 133 FIGASYIQSIVAGEL----NEYLTGKRDSSAPPIRLTTRVR--FNPNLTGFW--FGGVME 184

Query: 179 VI--LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAI-IL 235
           VI  + M  I+   AA +RERE G LE L+  P+   E+M+ K+       L+  ++ ++
Sbjct: 185 VINNINMLTIILVGAAFIREREHGTLEHLLVMPLTPFEIMMAKVWASGAAVLLAASVGLI 244

Query: 236 GLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILL 295
            +   I  VPI G++   L G  L++ ++ ++G+ + TIA +  Q   + +  ++P  LL
Sbjct: 245 AVIQAIMQVPIAGSVPLFLCGAALYLFSAASIGIFLGTIARSMPQFGLLFILTIVPLQLL 304

Query: 296 SGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLML 355
           SG + P E MP     +    P T+F+RL + I+ RGA L  +W + L +        ++
Sbjct: 305 SGGVTPRESMPEVVSDIMLGAPITYFVRLAQAILYRGAGLDTVWPEFLAITGIGAIFFLI 364

Query: 356 AALRFKKSL 364
           A  RF+KS+
Sbjct: 365 AHARFRKSV 373