Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., ABC-2 type transporter (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  152 bits (384), Expect = 2e-41
 Identities = 107/400 (26%), Positives = 188/400 (47%), Gaps = 43/400 (10%)

Query: 4   LFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFS 63
           L R+ A++ KEF  L +D  +  +V++ PL+Q ++FG+A   D+ ++P  + D+  S+ S
Sbjct: 33  LHRLLALIAKEFLTLLKDPKSRTVVILPPLLQTIIFGYAATFDLVDVPCAIYDEDRSAAS 92

Query: 64  RLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALIL-------------------- 103
           R L   V  +   RV ++     +  + + +G +R  L +                    
Sbjct: 93  RELAARVAGSPTFRVVEYLHRDADMARLLDAGQVRLVLRIGQGFERALTLRGGVGQPAAA 152

Query: 104 -------PSDLVARSQ---------QQRELGQWLIDGSDTMIAGALLGLKNMPLTD---- 143
                  PS   A S            + + Q + DG ++  AG  L      + D    
Sbjct: 153 DAGSGMEPSGTAATSTIPAPAPSVAPSQAVVQAVADGRNSNTAGLALNYMASIVDDFGAR 212

Query: 144 -LPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLGVILTMTMILFTSAAIVRERERGNL 202
            +   G QP   T      +NP+  S    VPG++ ++  +  ++ T+ ++ RERE+G  
Sbjct: 213 YVAAHGGQPRPSTLLTRAWHNPNLLSRWFFVPGIVVMVTMVVTLIITALSVAREREQGTF 272

Query: 203 ELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFIS 262
           + ++ TP    EL+IGK  P   VGL + ++I+ +    F VP+ G+L  +  G +LF+ 
Sbjct: 273 DQMLVTPYRPTELLIGKAAPGFLVGLFEASLIVAMAVLWFGVPLRGSLLTLYAGLVLFLF 332

Query: 263 ASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFM 322
           + + +GL+IS+++ T  Q +       +P+ +LSGF  P   M    QWL+ + P  + +
Sbjct: 333 SVVGIGLMISSLSVTMQQGLLGMFLFTMPAAILSGFATPIANMAEPVQWLTLVNPMRYIL 392

Query: 323 RLIRGIVLRGADLADLWRDTLW-LALFTLFGLMLAALRFK 361
            ++RG+ L GADL  L    LW LAL     +  A   F+
Sbjct: 393 IVVRGVFLEGADLT-LLAPQLWPLALIGAVCMAAAGWLFR 431