Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 80/352 (22%), Positives = 156/352 (44%), Gaps = 29/352 (8%)

Query: 7   IKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDV-RNIPIGVVDQSDSSFSRL 65
           + A++ +E R L RD     ++  IPL+ +L   +  +  + R +P+ +VD   S  SR+
Sbjct: 35  LMALVRRELRALWRDPWQLALISYIPLLGILCLWWLFSAGLPRQLPVAIVDLDHSQLSRM 94

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDL-------------VARSQ 112
           L   +K   V    Q +  ++ A  A+    + A ++ P D+             V  + 
Sbjct: 95  LTRQLKANPVTD-PQSFTDLSSAITAMQQAQVYAVVVFPYDMKKDLLTGHTPTIDVRYNS 153

Query: 113 QQRELGQWLIDGSDTMIAGALL---GLKNMPLTDLPTLGIQP-LTPT-FEITLLYNPSRR 167
           Q   +G+ L       +   LL   GLK + +T  P   +   L+P   + T L+N +  
Sbjct: 154 QFLLVGKLLSSQIQMSLGDGLLQVAGLKQL-MTGTPKSQVAVNLSPVKSQTTALFNRNNN 212

Query: 168 SAVNIVPGLLGVILTMTMILFTSAAIVRE------RERGNLELLITTPVHSIELMIGKIV 221
               +VP +L  +  +  +L  + ++ RE      +  G +   +T   H    ++ KI+
Sbjct: 213 YIGFLVPPVLVALWQLLSMLVIANSLNRELHLNAAQSVGGISNRLTE--HFWPKVLAKIL 270

Query: 222 PYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQA 281
            +  + ++Q   IL   +   A+P+ G+L+ +LF  L+ + A  +L L++  +     + 
Sbjct: 271 LFTPILMLQGGFILTWLYQYLALPLAGSLALLLFAQLIMLLAVWSLVLLVFVLMRDSARV 330

Query: 282 MQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGA 333
           +     +  P+    G  FP   MP  AQW   ++P++H++     +V  GA
Sbjct: 331 ISFCTALFAPAFAFMGITFPTHEMPQLAQWWRLVMPSSHYIESHVSVVSYGA 382



 Score = 24.6 bits (52), Expect = 0.005
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 312 LSELLPATH-----FMRLIRGIVLRGADLADLWRDTLWLALFTLFGLM 354
           L+E   A H     FM L+  +V R  +L  LWRD   LAL +   L+
Sbjct: 17  LNEAQNAVHPASSGFMALLMALVRR--ELRALWRDPWQLALISYIPLL 62