Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., ABC transporter, permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  439 bits (1129), Expect = e-128
 Identities = 223/372 (59%), Positives = 282/372 (75%), Gaps = 10/372 (2%)

Query: 4   LFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFS 63
           L RI AV+VKE RQLSRDR+TFGM+VMIPL+QL+LFG+AINTD R++P G+V+ SDSS+S
Sbjct: 2   LRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSSYS 61

Query: 64  RLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQ--------- 114
           R LV++V+ TQV+  K+ Y +  +AE AI  G+++A L L +DL  R  +          
Sbjct: 62  RALVKAVEATQVVDFKRSYSSAAQAEAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYF 121

Query: 115 -RELGQWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIV 173
              +GQWL+DGSDT++A  +  L+ MPL ++    ++   P+FE+   +NP +RS VNIV
Sbjct: 122 AEPVGQWLVDGSDTVVASTIRSLRQMPLDEITGRTLKSNPPSFEVVQYFNPEQRSVVNIV 181

Query: 174 PGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAI 233
           PGLLGVILTMTM++FTSAAIVRERE+GN+E LITTPV  +ELM+GKI PY+ VG +QV I
Sbjct: 182 PGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQVTI 241

Query: 234 ILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSI 293
           IL  GH +F VPI G +  I F  +LFI ASLTLGLVISTIA TQLQ+MQMTVFILLPSI
Sbjct: 242 ILSAGHLLFDVPIRGGIDSIAFAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSI 301

Query: 294 LLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGL 353
           LLSGFMFPYE MP AAQW++E LPATHFMR+ R IVLR A+++DL  D LW+  FT  GL
Sbjct: 302 LLSGFMFPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLGL 361

Query: 354 MLAALRFKKSLD 365
           ++A+LRF K LD
Sbjct: 362 LVASLRFSKRLD 373