Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., inner membrane transport permease YbhS from Klebsiella michiganensis M5al

 Score =  160 bits (405), Expect = 5e-44
 Identities = 111/374 (29%), Positives = 199/374 (53%), Gaps = 20/374 (5%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R++A+ VKE RQ+ RD  ++ + V+IPL+ L +FG+ IN D   + +GV+ +  S  +  
Sbjct: 10  RVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGVLLEQQSEEALD 69

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIA----SGDIRAALILPSDL---VARSQQQRELG 118
            V ++  +  I       TV++  + +     +G IRA + +P D    +AR      + 
Sbjct: 70  FVHTMTGSPYIDA-----TVSDNRQQLVQMMQAGRIRALVTIPVDFDRKMARPGDDAPI- 123

Query: 119 QWLIDGSDTMIA----GALLGLKNMPLTDLPTLGIQPLTPTFEITLLY--NPSRRSAVNI 172
           Q + DGS+   A    G + G+  +          +   P  ++   Y  NP+  S   I
Sbjct: 124 QLITDGSEPNTANFAQGYVEGIWQIWQQQRAEDRGETFEPLIDVQTRYWFNPAAISQHFI 183

Query: 173 VPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVA 232
           +PG + +I+T+   + TS  + RE ERG +E L++T +   EL++ K++PY F+G++ + 
Sbjct: 184 IPGAITIIMTVVGAILTSLVVAREWERGTMEALLSTEITRAELLLCKLIPYYFLGMLAML 243

Query: 233 IILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTV-FILLP 291
           + + +  FI  VP  G+L  + F T LF+ ++L +GL+ISTI   Q  A Q+ +    LP
Sbjct: 244 LCMLVAVFILGVPFRGSLVILFFITSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLP 303

Query: 292 SILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLF 351
           SI+LSGF+F  + MP   + ++ ++PA +F+  ++ + L G     L  + ++L    + 
Sbjct: 304 SIMLSGFIFQIDSMPAIIRAVTYVIPARYFVSTLQSLFLAGNIPVVLLVNVMFLIASAVM 363

Query: 352 GLMLAALRFKKSLD 365
            + L  L+ K+ LD
Sbjct: 364 FIGLTWLKTKRRLD 377