Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., ABC transporter inner membrane from Klebsiella michiganensis M5al

 Score =  145 bits (367), Expect = 1e-39
 Identities = 101/347 (29%), Positives = 180/347 (51%), Gaps = 12/347 (3%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+  ++ KE + L R+  T  +++M  LIQ+LLF FA   +V N  I + ++ +   +  
Sbjct: 4   RLWTLIRKELQSLLREPQTRAILIMPVLIQVLLFPFAATLEVTNATIAIYNEDNGKHA-- 61

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALIL---PSDLVAR-SQQQRELGQWL 121
            VE  +     +   H L +   ++   + D + AL++   P+D        Q    Q L
Sbjct: 62  -VELTQRFARAKAFTHVLLLKSPQEIRPTIDEQKALLVVRFPADFSRNLDTNQTAPLQLL 120

Query: 122 IDGSDT----MIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLL 177
           +DG ++    + A  L  +      DL     +P      +   YNP+      +VP L+
Sbjct: 121 LDGRNSNSAQIAANYLQQIVKSYQQDLLEGKAKPNNSELVVRNWYNPNLDYKWFVVPSLI 180

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
            +I T+ +++ TS ++ RERE+G L+ L+ +P+ + ++ IGK VP + V  +Q  I+LG+
Sbjct: 181 AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFIGKAVPALIVATLQATIVLGI 240

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSG 297
           G + + +P  G+L    F  +++  + +  GL+IS++ +TQ QA       ++P+ILLSG
Sbjct: 241 GIWAYQIPFAGSLLLFYFTMIVYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSG 300

Query: 298 FMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLW 344
           ++ P E MP   Q L+ + P  HF  + + I L+ A LA +W  +LW
Sbjct: 301 YVSPVENMPVWLQNLTWVNPIRHFTDITKQIYLKDASLAIVW-GSLW 346