Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., membrane protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  166 bits (420), Expect = 9e-46
 Identities = 105/367 (28%), Positives = 188/367 (51%), Gaps = 5/367 (1%)

Query: 1   MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDS 60
           M +L RI A++ KEF  L +DR +  +V++ PLIQ ++FG+A   DV  +P  V+D+  S
Sbjct: 1   METLVRIMALIRKEFLALFKDRRSRVVVIIPPLIQTIVFGYAATFDVERVPCAVMDEDRS 60

Query: 61  SFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQW 120
             SR L+  ++ ++  RV            A+  G++  AL +P              Q 
Sbjct: 61  GASRELLARLEGSRAFRVALVATDARMMADAVDRGEVVMALRIPQGFERAVHSGAVTVQA 120

Query: 121 LIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLT---PTFEITLL--YNPSRRSAVNIVPG 175
           ++DG ++      +      +       +  ++   P   + +   YNP+  S    VPG
Sbjct: 121 VVDGRNSNTGTLAVNYLQTVVAGYNETVLHRISGAGPPANLVMRAWYNPNLLSRWFFVPG 180

Query: 176 LLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIIL 235
           +L ++  +  +L T+ ++ RERE+G  + L+  P    E+++GK VP + +GL++V  IL
Sbjct: 181 ILAMVTLVVTLLVTALSVAREREQGTFDQLLVAPYRPAEVLVGKAVPGMVIGLVEVTGIL 240

Query: 236 GLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILL 295
            L  + F VP+ G+L  +  G  LF+ + + +GL++S++A T  Q +  T    +P+++L
Sbjct: 241 CLAVYWFDVPMRGSLLTLYAGLGLFLFSVVGVGLMVSSLAATMQQGLLGTFLFTMPAVIL 300

Query: 296 SGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLML 355
           SGF  P   M    + ++ + P  + + +IR + L GAD A L R+   LA   LF + +
Sbjct: 301 SGFATPVANMADGVRQMTVVNPLRYILVIIRSVFLEGADAAVLARELWPLAAIGLFCMTV 360

Query: 356 AALRFKK 362
           A   F++
Sbjct: 361 ATWLFRR 367