Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 1171 a.a., ABC transporter, ATP-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  155 bits (391), Expect = 7e-42
 Identities = 118/396 (29%), Positives = 192/396 (48%), Gaps = 47/396 (11%)

Query: 4    LFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVV-----DQS 58
            L R++ +LVKE  Q+ RD  +  + +++P++ LLLFG+ ++ D RNIP+ VV     D++
Sbjct: 789  LMRMRGLLVKEALQIVRDPSSIAIALVMPVVLLLLFGYGVSLDARNIPVAVVLDERSDEA 848

Query: 59   DSSFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRA----ALILPSDLVARSQQQ 114
            +S  +R L  +     V R           + A A  D R     A++   +  AR  Q 
Sbjct: 849  ESLAARFLSGTTFKGAVYR-----------DAAAALEDFRQRRVEAMVRVPEGFARGLQA 897

Query: 115  --RELGQWLIDGSDTMIAGALLGLKN----------------------MPLTDLPTLGIQ 150
                + Q +++G D   A  ++G  N                      M     P  G  
Sbjct: 898  GGTPVVQLVVNGVDANRARLVMGYVNGAWQGWLASRATGRPGYPSMVTMQDDGTPLRGGP 957

Query: 151  PLTPTFEITLLYNPSRRSAVNIVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPV 210
            P+  +  +   +NP   S   +VPGL+ +++T+   L T+  + RE ERG +E L+ TPV
Sbjct: 958  PVNVSARVW--FNPEAESRNYLVPGLVVLVMTLIGTLLTALVMAREWERGTMEALLVTPV 1015

Query: 211  HSIELMIGKIVPYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLV 270
               EL++GK++PY  +G+  + +   L  ++F VP+ G+   +L    LF+ A+L +GL+
Sbjct: 1016 RIGELLVGKLLPYFVLGMAGMGLCTSLALWLFDVPLRGSALVLLGMASLFLLAALGMGLL 1075

Query: 271  ISTIANTQLQAMQMTVFI-LLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIV 329
            IS +A  Q  A Q  + +  LP+  LSGF+F     P   + +S L+ A +F   ++ I 
Sbjct: 1076 ISVLARNQFVAGQAAILVAFLPAFFLSGFIFDLAAAPAPIRAVSHLIAARYFASSLKTIF 1135

Query: 330  LRGADLADLWRDTLWLALFTLFGLMLAALRFKKSLD 365
            L G   A L  D L LA+     L LA  R  K L+
Sbjct: 1136 LAGDVTAVLLPDALALAILATVLLGLARRRMHKRLE 1171



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 12/49 (24%)

Query: 129 IAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLL 177
           +A  L+   +M L D PT+G+ PL            SRR   NIV GL+
Sbjct: 172 LACTLVKSPDMLLLDEPTVGVDPL------------SRRELWNIVHGLV 208