Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 97.4 bits (241), Expect = 6e-25
 Identities = 98/382 (25%), Positives = 167/382 (43%), Gaps = 36/382 (9%)

Query: 10  VLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDV-RNIPIGVVDQSDSSFSRLLVE 68
           V+ +E R+L    +    +V+ PL   L F   +++ + +N+P GVVD  DSS SR +V 
Sbjct: 14  VMQRECRRLVSRPLYLFCMVIAPLFCYLFFTTLMDSGLPQNLPAGVVDMDDSSTSRNIVR 73

Query: 69  SVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDTM 128
           ++       V  HY  V +A  A+  G I     +P  L A +Q QR+           +
Sbjct: 74  NLDAFSQTGVVAHYSNVTDARIAVQEGKIYGFFYIPKGLSAEAQSQRQPKISFYTNYSYL 133

Query: 129 IAGALLGLKNMPLTDLPTLG--------------------IQPLTPTFEITLLYNPSRRS 168
           IAG+LL  ++M +    T G                    +QP+    +   L NP    
Sbjct: 134 IAGSLL-FRDMKMMGELTAGSAARSVLYAKGATEDQAMGFLQPI--VIDTHPLNNPWLNY 190

Query: 169 AVNIVPGLLGVILTMTMILFTSAAI-VRERERGNLELLITTPVHSIELMIGKIVP----Y 223
           +V +   L+  +L + + + T  +I V  ++R   E L  +       + GK++P    +
Sbjct: 191 SVYLCNTLIPGVLMLLIFMVTVYSIGVEIKDRTAREWLRMSNNSIYIALAGKLLPHTVVF 250

Query: 224 IFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLV-ISTIANTQLQAM 282
             +G+     + G  HF    P N  +  ++F TL  + AS   G+V I T+   +L   
Sbjct: 251 FIMGIFYNVYLYGFLHF----PCNSGIFPMIFATLCLVLASQCCGIVMIGTLPTLRLGLS 306

Query: 283 QMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDT 342
             +++ ++ S  +SGF FP   M    Q LS L P  H+  +     L G  +A  W + 
Sbjct: 307 FASLWGVI-SFSISGFSFPVMAMNPVLQALSNLFPLRHYFLIYVDQALNGYSMAYSWSNY 365

Query: 343 LWLALFTLFGLMLAALRFKKSL 364
           + L +F +    +   R K++L
Sbjct: 366 MALLIFMMLPFFVVH-RLKEAL 386