Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., conserved hypothetical protein, putative transmembrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  102 bits (253), Expect = 2e-26
 Identities = 87/371 (23%), Positives = 168/371 (45%), Gaps = 27/371 (7%)

Query: 8   KAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAI-NTDVRNIPIGVVDQSDSSFSRLL 66
           ++VL++E+R+++  R+   + +++PL  L        N  + NIPIG+VDQ +++ SR +
Sbjct: 11  RSVLLREWRRMTSRRLYLCVCIILPLFTLFFMATIFGNGQMENIPIGIVDQDNTASSRAI 70

Query: 67  VESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLV--ARSQQQRELGQW---- 120
             ++      +V +H++    A KA+   +I   L +P      A S +   L  +    
Sbjct: 71  TRNISAVPTFKVTRHFVNEEAARKAVQKKEIYGYLSIPPKFEQDAISGKNATLSYYYHYA 130

Query: 121 LIDGSDTMIAGALLGLKNMPLTDLP----TLGI-QPLTPTFEITL------LYNPSRRSA 169
           L+     ++A     L  + L+ +      LG+ Q    TF + +      +YNPS   +
Sbjct: 131 LLSVGGELMAAFETSLAPVSLSPIVMQAVALGVEQDKITTFLLPVQASNHPIYNPSLDYS 190

Query: 170 VNIVPGLLGVILTMTMILFTSAAI-VRERERGNLELLITTPVHSIELMIGKIVPY----I 224
           V +      V+  + ++L T  A+ +  + R   E L     + +  ++GK++PY    I
Sbjct: 191 VYLSQPFFFVLFQVLILLITVYAVGIEIKFRTADEWLFVAKGNMVTAVLGKLLPYTIIFI 250

Query: 225 FVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQM 284
            +G +   ++ G+ H    +P  G+   +   T LF+ A+  LGL + ++       + +
Sbjct: 251 LIGWLANYVMFGILH----IPFQGSWLLMNMLTALFVVATQALGLFLFSLFPAISLIISI 306

Query: 285 TVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLW 344
              +      LSG  FP   M    +  S L P  HF  +++ ++  G+    LW   + 
Sbjct: 307 VSMVGSLGATLSGVTFPVPNMYPLVRDASYLFPVRHFTEMMQNMLYGGSGFIHLWPSAVI 366

Query: 345 LALFTLFGLML 355
           L +F L  L+L
Sbjct: 367 LCIFPLLALVL 377