Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  196 bits (499), Expect = 6e-55
 Identities = 109/365 (29%), Positives = 210/365 (57%), Gaps = 11/365 (3%)

Query: 9   AVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVE 68
           A + KEF  + RDR T  +++ +P++Q++LFGFAI+T+V+N+ + V+D S+   +R +++
Sbjct: 6   AFVKKEFYHIFRDRRTMLILLGMPVVQIILFGFAISTEVKNVRLAVLDPSNDVVTRKIID 65

Query: 69  SVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDTM 128
            +  ++   V   + +  E E A     I  A++                Q ++D +D  
Sbjct: 66  RLDASEYFTVTTRFHSPQEMETAFRKNKIDMAIVFGERFADGLYTGDARVQLIVDATDPN 125

Query: 129 I-------AGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLGVIL 181
           +       A +++      +   P + +  LTP  ++ LLYNP  +SA N VPG++G+IL
Sbjct: 126 MSTSQSNYAASIVSSAGQEMLP-PNVFVSRLTP--DVKLLYNPQMKSAYNFVPGVMGLIL 182

Query: 182 TMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHFI 241
            +   + TS +IVRE+E G +E+L+ +PV  + +++ K VPY  +  + +  IL L  F+
Sbjct: 183 MLICAMMTSISIVREKETGTMEVLLVSPVRPLFIVLAKAVPYFVLSFVNLTTILLLSVFV 242

Query: 242 FAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMT-VFILLPSILLSGFMF 300
             VP+ G+L  ++  +LLFI  SL LGL+IS++ +TQ+ AM  + + +++P+++LSG +F
Sbjct: 243 LDVPVVGSLFWLVMVSLLFIFVSLALGLLISSVTSTQVAAMLASGMILMMPTMVLSGMIF 302

Query: 301 PYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRF 360
           P E MP   + +S+++PA  +++ +R +++ G  +  + ++   L L  +  + ++  +F
Sbjct: 303 PVESMPVILRAISDIIPARWYIQAVRKLMIEGVPVVLVLKEIGILLLMAVVLITISIRKF 362

Query: 361 KKSLD 365
           K  L+
Sbjct: 363 KYRLE 367