Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 89/388 (22%), Positives = 161/388 (41%), Gaps = 38/388 (9%)

Query: 7   IKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDV-RNIPIGVVDQSDSSFSRL 65
           I A++ +E R L RD     ++  IPL+ +L   +  +  + R +P+ +VDQ  S  SR+
Sbjct: 31  IIALVRRELRALWRDPWQLALISYIPLLGILCLWWLFSAGLPRQLPVAIVDQDHSQLSRM 90

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDL-------------VARSQ 112
           L   +K   V   +  +  +  A  A+    + A ++ P D+             V  + 
Sbjct: 91  LTRQLKANPVTEPRS-FTDLPSAVAAMQQAQVYAVVVFPHDMKKDLLTGHKPTIDVRYNS 149

Query: 113 QQRELGQWLIDGSDTMIAGALL---GLKNMPLTDLPTLGIQP-LTPT-FEITLLYNPSRR 167
           Q   +G+ L       +   LL   GLK + +T  P   +   L+P   + T L+N +  
Sbjct: 150 QFLLVGKLLSSQIQLSLGDGLLQVAGLKQL-MTGTPKSQVAVNLSPVKSQTTALFNRNNN 208

Query: 168 SAVNIVPGLLGVILTMTMILFTSAAIVRE-------RERGNLELLITTPVHSIELMIGKI 220
               +VP +L  +  +  +L  + ++ RE        E G    L     H    ++ KI
Sbjct: 209 YIGFLVPPVLVALWQLLSMLVMANSLNRELHLNAAQSEEGISNRLTE---HFWPKVLAKI 265

Query: 221 VPYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQ 280
           + +  + ++Q   IL   +   A+P  G+L+ +L   L+ + A  +L L I  +     +
Sbjct: 266 LLFTPILMLQGGFILAWLYLYLALPFAGSLALLLVAQLIMLLAVWSLVLFIFVLMRDSAR 325

Query: 281 AMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGA------- 333
            +     +  P+    G  FP   MP  AQW   ++P++H++     +V  GA       
Sbjct: 326 VISFCTALFAPAFAFMGITFPTHEMPQLAQWWRLIMPSSHYIESHVSVVSYGATWSTLAQ 385

Query: 334 DLADLWRDTLWLALFTLFGLMLAALRFK 361
            L+  W     L L  L  + L  +  K
Sbjct: 386 QLSSYWGFIGLLPLIYLLAIKLLPMTVK 413